Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22865

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
4,352,351	-		LU632_RS22860	0.14	-0.5
4,352,424	-		LU632_RS22860	0.21	-0.9
4,352,465	-		LU632_RS22860	0.25	-0.5
4,353,213	-				-1.0
4,353,252	-				-1.2
4,353,332	-				-0.3
4,353,350	-				-1.8
4,353,439	-	aroB	LU632_RS22865	0.13	-0.9
4,353,439	-	aroB	LU632_RS22865	0.13	+1.7
4,353,503	-	aroB	LU632_RS22865	0.19	-1.6
4,353,824	-	aroB	LU632_RS22865	0.49	-1.3
4,353,824	-	aroB	LU632_RS22865	0.49	+0.1
4,354,010	-	aroB	LU632_RS22865	0.66	-0.3
4,354,157	-	aroB	LU632_RS22865	0.79	-0.3
4,354,197	-	aroB	LU632_RS22865	0.83	-0.3
4,354,197	-	aroB	LU632_RS22865	0.83	+1.7
4,354,224	-	aroB	LU632_RS22865	0.85	+1.7
4,354,389	-				+0.1
4,354,389	-				-1.0
4,354,453	-				+0.7
4,355,195	-				-0.3
4,355,198	+				+0.2
4,355,199	-				+0.7
4,355,199	-				-1.1
4,355,199	-				-0.1
4,355,199	-				-0.1
4,355,281	-				+0.4
4,355,281	-				-0.7
4,355,362	+				+0.1