Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22855

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
4,350,308	+		LU632_RS22845	0.66	-1.2
4,350,308	+		LU632_RS22845	0.66	-1.8
4,350,308	+		LU632_RS22845	0.66	-0.6
4,350,309	-		LU632_RS22845	0.66	+0.1
4,350,309	-		LU632_RS22845	0.66	+0.0
4,350,309	-		LU632_RS22845	0.66	+0.1
4,350,342	-		LU632_RS22845	0.71	+1.5
4,350,378	-		LU632_RS22845	0.76	-1.3
4,350,432	+		LU632_RS22845	0.84	+0.9
4,350,438	+		LU632_RS22845	0.85	+0.1
4,350,438	+		LU632_RS22845	0.85	-0.0
4,350,438	+		LU632_RS22845	0.85	-1.8
4,350,438	+		LU632_RS22845	0.85	+1.3
4,350,439	-		LU632_RS22845	0.85	+1.5
4,350,439	-		LU632_RS22845	0.85	-0.4
4,350,460	-		LU632_RS22845	0.88	-1.6
4,350,460	-		LU632_RS22845	0.88	-1.5
4,350,812	-	rpe	LU632_RS22850	0.41	+0.1
4,350,883	-	rpe	LU632_RS22850	0.52	-1.8
4,351,092	-	rpe	LU632_RS22850	0.82	-0.3
4,352,105	-				-1.5
4,352,105	-				+0.1
4,352,112	-				-2.0
4,352,112	-				+0.6
4,352,112	-				+0.1
4,352,143	-				+1.7
4,352,143	-				-0.9
4,352,143	-				+0.4
4,352,351	-		LU632_RS22860	0.14	-0.5
4,352,424	-		LU632_RS22860	0.21	-0.9
4,352,465	-		LU632_RS22860	0.25	-0.5