Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22135

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
4,226,474	-				-1.5
4,226,535	+				+0.5
4,226,536	-				-0.1
4,226,550	+				+1.7
4,226,562	+				+1.5
4,226,599	+				+0.2
4,226,600	-				-0.5
4,226,600	-				-0.5
4,226,603	+				+0.6
4,226,603	+				-0.7
4,226,604	-				+0.7
4,226,604	-				+0.7
4,226,647	-				+4.3
4,226,998	+				+0.2
4,226,998	+				+0.4
4,226,998	+				+1.0
4,226,999	-				+0.1
4,227,003	+				+0.4
4,227,003	+				+0.1
4,227,003	+				-0.6
4,227,108	-				-0.5
4,227,115	+				-0.8
4,227,116	-				-0.4
4,227,116	-				+1.7
4,227,116	-				-0.6
4,227,116	-				+0.6
4,227,202	+				-0.4
4,227,203	-				+1.4
4,227,203	-				-1.0
4,227,203	-				+2.0
4,227,277	+		LU632_RS22130	0.28	-0.6
4,227,277	+		LU632_RS22130	0.28	+0.1
4,227,277	+		LU632_RS22130	0.28	+0.2
4,227,277	+		LU632_RS22130	0.28	+2.2
4,227,277	+		LU632_RS22130	0.28	-0.4
4,227,277	+		LU632_RS22130	0.28	-1.5
4,227,278	-		LU632_RS22130	0.29	-1.4
4,227,278	-		LU632_RS22130	0.29	+0.1
4,227,359	-				+0.4
4,227,359	-				+2.1
4,227,359	-				+1.5
4,227,361	+				-1.1
4,227,361	+				+1.7
4,227,362	-				-0.8
4,227,363	+				-1.6
4,227,363	+				+1.3
4,227,363	+				-0.1
4,227,363	+				-1.5
4,227,364	-				-1.3
4,227,364	-				+2.7
4,227,498	-				-0.6
4,227,566	+				-0.6
4,227,567	-				-3.2
4,227,567	-				-1.3
4,227,567	-				-1.8
4,227,570	+				-1.3
4,227,570	+				-1.9
4,227,571	-				-3.4
4,227,571	-				-3.3
4,227,575	+				-0.3
4,227,575	+				-1.7
4,227,576	-				-0.7
4,227,576	-				-2.4
4,227,576	-				-1.2
4,227,576	-				+0.1
4,227,576	-				-1.1
4,227,735	+	glnG	LU632_RS22135	0.20	-2.9
4,227,736	-	glnG	LU632_RS22135	0.20	-0.9
4,227,782	+	glnG	LU632_RS22135	0.23	-2.2
4,227,917	+	glnG	LU632_RS22135	0.32	-0.6
4,227,966	+	glnG	LU632_RS22135	0.36	-1.3
4,228,032	-	glnG	LU632_RS22135	0.41	-0.9
4,228,201	-	glnG	LU632_RS22135	0.53	-0.3
4,228,280	+	glnG	LU632_RS22135	0.58	-1.3
4,228,341	+	glnG	LU632_RS22135	0.63	-2.2
4,228,378	-	glnG	LU632_RS22135	0.65	+0.1
4,228,449	-	glnG	LU632_RS22135	0.70	-3.3
4,228,568	-	glnG	LU632_RS22135	0.79	-0.9
4,228,628	+	glnG	LU632_RS22135	0.83	-1.0
4,228,670	+	glnG	LU632_RS22135	0.86	-0.5
4,228,671	-	glnG	LU632_RS22135	0.86	-1.5
4,228,888	-				-0.3
4,228,936	+				+0.1
4,229,022	-	glnL	LU632_RS22140	0.14	-2.8
4,229,039	-	glnL	LU632_RS22140	0.16	-2.6
4,229,145	+	glnL	LU632_RS22140	0.26	-2.6
4,229,145	+	glnL	LU632_RS22140	0.26	-1.4
4,229,145	+	glnL	LU632_RS22140	0.26	-1.3
4,229,332	-	glnL	LU632_RS22140	0.43	-3.0
4,229,427	-	glnL	LU632_RS22140	0.52	-3.1
4,229,427	-	glnL	LU632_RS22140	0.52	-1.5
4,229,553	+	glnL	LU632_RS22140	0.64	-3.6
4,229,553	+	glnL	LU632_RS22140	0.64	-1.2
4,229,554	-	glnL	LU632_RS22140	0.65	-0.9
4,229,554	-	glnL	LU632_RS22140	0.65	-0.4
4,229,618	-	glnL	LU632_RS22140	0.71	-1.7
4,229,652	+	glnL	LU632_RS22140	0.74	-1.9
4,229,652	+	glnL	LU632_RS22140	0.74	-1.4
4,229,652	+	glnL	LU632_RS22140	0.74	-0.9
4,229,652	+	glnL	LU632_RS22140	0.74	-2.4
4,229,652	+	glnL	LU632_RS22140	0.74	-2.4
4,229,653	-	glnL	LU632_RS22140	0.74	-1.7
4,229,653	-	glnL	LU632_RS22140	0.74	-0.4
4,229,739	+	glnL	LU632_RS22140	0.82	-1.9
4,229,739	+	glnL	LU632_RS22140	0.82	+0.1
4,229,740	-	glnL	LU632_RS22140	0.82	-2.6
4,229,867	-				-2.9
4,229,868	+				-2.6
4,229,868	+				-1.5