Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21895

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
4,180,475	-	grxC	LU632_RS21885	0.32	+1.7
4,180,546	+	grxC	LU632_RS21885	0.60	-1.6
4,180,754	-		LU632_RS21890	0.21	+1.4
4,180,953	-		LU632_RS21890	0.67	-1.4
4,181,025	-		LU632_RS21890	0.84	+0.4
4,181,083	+				+0.4
4,181,086	+				+0.7
4,181,086	+				-0.1
4,181,130	+				-0.5
4,181,192	+				-0.8
4,181,230	-				-0.7
4,181,376	-				+0.3
4,181,416	+				+0.3
4,181,518	-				-0.9
4,181,569	+	envC	LU632_RS21895	0.12	-1.8
4,181,570	-	envC	LU632_RS21895	0.12	-1.2
4,181,629	-	envC	LU632_RS21895	0.16	-1.6
4,181,903	-	envC	LU632_RS21895	0.37	-1.7
4,181,995	-	envC	LU632_RS21895	0.44	+0.0
4,182,176	-	envC	LU632_RS21895	0.58	-0.8
4,182,241	+	envC	LU632_RS21895	0.63	-0.9
4,182,241	+	envC	LU632_RS21895	0.63	-0.9
4,182,280	+	envC	LU632_RS21895	0.66	-2.3
4,182,280	+	envC	LU632_RS21895	0.66	+0.4
4,182,284	+	envC	LU632_RS21895	0.66	-1.1
4,182,284	+	envC	LU632_RS21895	0.66	-1.5
4,182,285	-	envC	LU632_RS21895	0.67	-0.3
4,182,285	-	envC	LU632_RS21895	0.67	-0.6
4,182,285	-	envC	LU632_RS21895	0.67	-1.9
4,182,459	+	envC	LU632_RS21895	0.80	+0.5
4,182,460	-	envC	LU632_RS21895	0.80	-0.9
4,182,460	-	envC	LU632_RS21895	0.80	-0.9
4,182,484	-	envC	LU632_RS21895	0.82	-1.2
4,182,484	-	envC	LU632_RS21895	0.82	-1.7
4,182,547	+	envC	LU632_RS21895	0.87	-2.2
4,182,548	-	envC	LU632_RS21895	0.87	-0.3
4,182,558	-	envC	LU632_RS21895	0.87	+0.7
4,182,564	-	envC	LU632_RS21895	0.88	-0.9
4,182,564	-	envC	LU632_RS21895	0.88	-0.7
4,182,565	+	envC	LU632_RS21895	0.88	-0.5
4,182,600	+				-0.7
4,182,600	+				-1.1
4,182,719	+				+1.3
4,182,720	-				-0.6
4,182,738	+				+3.7
4,182,765	-				+0.5
4,182,769	-				+0.3
4,182,769	-				+0.4
4,182,769	-				-0.5
4,182,852	-		LU632_RS21900	0.14	-0.3
4,182,882	-		LU632_RS21900	0.17	-1.5
4,182,884	+		LU632_RS21900	0.17	+0.7
4,182,898	+		LU632_RS21900	0.19	-0.4
4,183,029	-		LU632_RS21900	0.33	-0.9
4,183,146	-		LU632_RS21900	0.45	+0.5
4,183,176	+		LU632_RS21900	0.48	+0.7
4,183,177	-		LU632_RS21900	0.48	+0.7
4,183,183	-		LU632_RS21900	0.49	-1.3
4,183,359	+		LU632_RS21900	0.68	+0.9
4,183,359	+		LU632_RS21900	0.68	+1.1
4,183,360	-		LU632_RS21900	0.68	-1.0
4,183,360	-		LU632_RS21900	0.68	-0.3
4,183,373	+		LU632_RS21900	0.69	+4.0
4,183,385	+		LU632_RS21900	0.71	-0.3
4,183,386	-		LU632_RS21900	0.71	-0.3
4,183,386	-		LU632_RS21900	0.71	-0.4
4,183,404	+		LU632_RS21900	0.73	+0.4
4,183,405	-		LU632_RS21900	0.73	-0.1
4,183,408	-		LU632_RS21900	0.73	+0.1
4,183,534	-		LU632_RS21900	0.87	-0.7
4,183,579	-				-0.1
4,183,667	+				-1.7
4,183,667	+				+1.0
4,183,667	+				+0.9
4,183,672	+				+1.8
4,183,688	+				+0.4
4,183,689	-				+0.4
4,183,691	-				-0.0
4,183,691	-				+5.5
4,183,691	-				+2.3
4,183,709	+				+2.3
4,183,710	-				-0.8