Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21845

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
4,173,404	+				-0.3
4,173,405	-				-0.4
4,173,408	-				-0.1
4,173,408	-				+1.0
4,173,408	-				+0.2
4,173,408	-				-0.2
4,173,408	-				-0.8
4,173,408	-				+1.8
4,173,408	-				+1.4
4,173,409	+				+3.1
4,173,409	+				+0.3
4,173,410	-				-0.2
4,173,506	-				-0.3
4,173,523	-				+1.2
4,173,529	+				+0.2
4,173,640	-	fieF	LU632_RS21845	0.13	+1.5
4,173,650	+	fieF	LU632_RS21845	0.14	-1.3
4,173,840	+	fieF	LU632_RS21845	0.36	-0.6
4,173,841	-	fieF	LU632_RS21845	0.36	+0.8
4,174,056	-	fieF	LU632_RS21845	0.60	-3.3
4,174,110	-	fieF	LU632_RS21845	0.66	+0.3
4,174,110	-	fieF	LU632_RS21845	0.66	+1.3
4,174,110	-	fieF	LU632_RS21845	0.66	-0.8
4,174,110	-	fieF	LU632_RS21845	0.66	+1.8
4,174,147	+	fieF	LU632_RS21845	0.70	-0.5
4,174,148	-	fieF	LU632_RS21845	0.70	+1.0
4,174,249	+	fieF	LU632_RS21845	0.81	+0.2
4,174,250	-	fieF	LU632_RS21845	0.82	-0.7
4,174,271	+	fieF	LU632_RS21845	0.84	-3.8
4,174,272	-	fieF	LU632_RS21845	0.84	-0.5
4,174,272	-	fieF	LU632_RS21845	0.84	+1.3
4,174,272	-	fieF	LU632_RS21845	0.84	-0.4
4,174,272	-	fieF	LU632_RS21845	0.84	+1.3
4,174,387	+				+0.2
4,174,427	+				+0.5
4,174,427	+				+1.0
4,174,427	+				+0.2
4,174,428	-				+0.7
4,174,428	-				+0.2
4,174,429	+				-1.3
4,174,429	+				-0.2
4,174,429	+				-0.4
4,174,445	+				+0.0
4,174,640	+				+0.8
4,174,641	-				+0.5
4,174,645	-				+0.2
4,174,676	-				+2.8
4,174,687	+				-0.0
4,174,687	+				+0.4
4,174,689	+				+0.7
4,174,689	+				+0.6
4,174,738	+				+0.3
4,174,753	+				+1.7
4,174,754	-				+1.3
4,174,754	-				-0.8
4,174,836	-	cpxP	LU632_RS21850	0.19	+1.0
4,174,934	+	cpxP	LU632_RS21850	0.38	+1.6
4,174,934	+	cpxP	LU632_RS21850	0.38	-0.1
4,174,945	+	cpxP	LU632_RS21850	0.41	-2.0
4,174,945	+	cpxP	LU632_RS21850	0.41	+3.7
4,174,946	-	cpxP	LU632_RS21850	0.41	-0.1
4,174,946	-	cpxP	LU632_RS21850	0.41	+0.5
4,174,946	-	cpxP	LU632_RS21850	0.41	+1.2
4,174,946	-	cpxP	LU632_RS21850	0.41	+1.0
4,174,946	-	cpxP	LU632_RS21850	0.41	+5.1
4,174,979	-	cpxP	LU632_RS21850	0.47	+1.0
4,174,997	+	cpxP	LU632_RS21850	0.51	+0.4
4,175,013	-	cpxP	LU632_RS21850	0.54	-1.4
4,175,234	+				+2.6
4,175,235	-				+1.5
4,175,235	-				-1.8
4,175,337	-				+0.6
4,175,337	-				-1.0
4,175,337	-				-0.3