Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21325

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
4,076,852	+		LU632_RS21320	0.47	-1.1
4,076,958	+		LU632_RS21320	0.54	-1.4
4,076,958	+		LU632_RS21320	0.54	-0.9
4,076,996	+		LU632_RS21320	0.57	+1.0
4,076,996	+		LU632_RS21320	0.57	-1.0
4,076,997	-		LU632_RS21320	0.57	-1.2
4,076,997	-		LU632_RS21320	0.57	+0.7
4,076,997	-		LU632_RS21320	0.57	-0.9
4,076,997	-		LU632_RS21320	0.57	-0.9
4,077,030	+		LU632_RS21320	0.59	-0.3
4,077,056	-		LU632_RS21320	0.61	-0.3
4,077,058	+		LU632_RS21320	0.61	+0.8
4,077,058	+		LU632_RS21320	0.61	+0.9
4,077,058	+		LU632_RS21320	0.61	-1.1
4,077,058	+		LU632_RS21320	0.61	-0.8
4,077,058	+		LU632_RS21320	0.61	+0.9
4,077,059	-		LU632_RS21320	0.61	-1.5
4,077,059	-		LU632_RS21320	0.61	-0.5
4,077,061	+		LU632_RS21320	0.62	-0.9
4,077,062	-		LU632_RS21320	0.62	-0.5
4,077,064	+		LU632_RS21320	0.62	+0.5
4,077,064	+		LU632_RS21320	0.62	-1.1
4,077,065	-		LU632_RS21320	0.62	+0.4
4,077,065	-		LU632_RS21320	0.62	+0.8
4,077,065	-		LU632_RS21320	0.62	+0.5
4,077,158	+		LU632_RS21320	0.68	-0.4
4,077,158	+		LU632_RS21320	0.68	+1.3
4,077,159	-		LU632_RS21320	0.68	+0.1
4,077,205	+		LU632_RS21320	0.72	-1.3
4,077,451	+		LU632_RS21320	0.89	+1.5
4,077,452	-		LU632_RS21320	0.89	+1.3
4,077,604	-				-0.5
4,077,650	-				+1.3
4,077,815	+				+0.1
4,077,816	-				+1.0
4,077,841	+				+0.6
4,077,841	+				+0.9
4,077,842	-				+0.2
4,077,842	-				-0.0
4,077,901	-	sspB	LU632_RS21325	0.15	+0.1
4,077,992	+	sspB	LU632_RS21325	0.34	+1.1
4,078,015	-	sspB	LU632_RS21325	0.38	-0.6
4,078,018	-	sspB	LU632_RS21325	0.39	-1.3
4,078,018	-	sspB	LU632_RS21325	0.39	-1.3
4,078,041	-	sspB	LU632_RS21325	0.43	-0.8
4,078,041	-	sspB	LU632_RS21325	0.43	-1.3
4,078,045	-	sspB	LU632_RS21325	0.44	-1.2
4,078,161	+	sspB	LU632_RS21325	0.68	-1.0
4,078,162	-	sspB	LU632_RS21325	0.68	-3.0
4,078,213	+	sspB	LU632_RS21325	0.78	-2.4
4,078,225	+	sspB	LU632_RS21325	0.81	+2.4
4,078,286	+				-1.6
4,079,180	+				+0.4
4,079,180	+				-1.1
4,079,181	-				+0.5
4,079,181	-				+0.3
4,079,181	-				+0.1
4,079,181	-				-1.1
4,079,181	-				-1.0
4,079,181	-				-0.1
4,079,181	-				-1.1
4,079,183	+				-0.1
4,079,192	-				-1.5