Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20795

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
3,968,541	+		LU632_RS20790	0.36	-1.2
3,968,638	-		LU632_RS20790	0.43	-0.5
3,969,406	-				+0.3
3,969,406	-				-1.9
3,969,491	+		LU632_RS20795	0.12	-0.9
3,970,041	+		LU632_RS20795	0.55	-0.1
3,970,041	+		LU632_RS20795	0.55	+1.0
3,970,758	+				+0.6
3,971,078	+		LU632_RS20800	0.58	+2.3
3,971,172	+		LU632_RS20800	0.88	+0.6
3,971,173	-		LU632_RS20800	0.89	-0.3
3,971,240	+				-1.5
3,971,413	-		LU632_RS20805	0.85	+0.0
3,971,413	-		LU632_RS20805	0.85	+2.2
3,971,439	-				+0.6
3,971,477	-				+0.2
3,971,500	-				-0.9
3,971,517	-				-1.4