Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20090

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
3,826,039	+				+1.3
3,826,039	+				+0.1
3,826,039	+				-0.7
3,826,039	+				-1.7
3,826,040	-				+1.6
3,826,040	-				+0.8
3,826,041	+				-1.2
3,826,111	+				+1.2
3,826,112	-				+0.8
3,826,112	-				-0.3
3,826,112	-				-2.5
3,826,318	+	gluQRS	LU632_RS20085	0.32	-0.5
3,826,318	+	gluQRS	LU632_RS20085	0.32	+0.7
3,826,388	+	gluQRS	LU632_RS20085	0.40	-0.7
3,826,389	-	gluQRS	LU632_RS20085	0.40	+1.4
3,826,389	-	gluQRS	LU632_RS20085	0.40	+1.4
3,826,537	+	gluQRS	LU632_RS20085	0.56	+0.7
3,826,537	+	gluQRS	LU632_RS20085	0.56	-0.3
3,826,538	-	gluQRS	LU632_RS20085	0.56	-1.1
3,826,540	-	gluQRS	LU632_RS20085	0.57	+2.2
3,826,586	+	gluQRS	LU632_RS20085	0.62	-0.4
3,826,636	+	gluQRS	LU632_RS20085	0.67	+0.0
3,826,637	-	gluQRS	LU632_RS20085	0.67	+0.2
3,826,666	+	gluQRS	LU632_RS20085	0.71	-0.4
3,826,677	-	gluQRS	LU632_RS20085	0.72	+3.1
3,826,817	+	gluQRS	LU632_RS20085	0.87	-0.3
3,826,817	+	gluQRS	LU632_RS20085	0.87	-0.6
3,826,850	+				+1.0
3,826,850	+				-0.6
3,826,899	+				-0.2
3,826,899	+				-0.5
3,826,983	+				-0.8
3,826,984	-				-0.1
3,827,549	+	pcnB	LU632_RS20090	0.36	+2.4
3,827,552	+	pcnB	LU632_RS20090	0.36	-0.7
3,827,552	+	pcnB	LU632_RS20090	0.36	+0.8
3,827,893	+	pcnB	LU632_RS20090	0.60	+1.5
3,828,216	+	pcnB	LU632_RS20090	0.83	+6.0
3,828,958	+				+1.3
3,828,958	+				+1.3
3,828,958	+				-0.8
3,828,959	-				+0.7
3,828,974	+				+0.8
3,829,063	+				-1.3
3,829,072	-	panB	LU632_RS20100	0.10	+0.1
3,829,189	+	panB	LU632_RS20100	0.25	-1.5
3,829,189	+	panB	LU632_RS20100	0.25	+1.3
3,829,259	-	panB	LU632_RS20100	0.34	-0.8
3,829,300	-	panB	LU632_RS20100	0.39	+2.7
3,829,317	+	panB	LU632_RS20100	0.41	+2.1
3,829,318	-	panB	LU632_RS20100	0.41	+1.9