Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19585

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
3,712,637	+				-1.1
3,712,638	-				-0.0
3,712,638	-				+1.1
3,712,659	+				-1.3
3,712,683	+				-0.3
3,712,684	-				-0.9
3,712,686	+				+0.8
3,712,734	+				+1.2
3,712,737	+				+0.6
3,712,737	+				+2.4
3,712,738	-				-0.4
3,712,800	+	fabR	LU632_RS19580	0.18	-0.7
3,712,847	-	fabR	LU632_RS19580	0.25	+1.3
3,713,027	-	fabR	LU632_RS19580	0.54	+0.0
3,713,053	+	fabR	LU632_RS19580	0.58	+3.9
3,713,053	+	fabR	LU632_RS19580	0.58	+0.6
3,713,054	-	fabR	LU632_RS19580	0.58	+0.6
3,713,117	+	fabR	LU632_RS19580	0.68	-0.4
3,713,118	-	fabR	LU632_RS19580	0.68	+0.6
3,713,354	-				+0.2
3,713,355	+				+0.3
3,713,356	-				+1.6
3,713,372	+				+1.9
3,713,378	-				+0.3
3,713,411	-				-0.8
3,713,422	+				+1.6
3,713,423	-				+1.2
3,713,434	-				-1.2
3,713,495	+				-2.0
3,713,499	+				-1.7
3,713,499	+				-0.7
3,713,500	-				-1.5
3,713,500	-				-1.0
3,713,506	+				-0.8
3,713,507	-				-0.4
3,713,507	-				-2.8
3,713,507	-				-1.2
3,713,539	+				-0.5
3,713,539	+				-0.8
3,713,539	+				-0.4
3,713,540	-				-2.0
3,713,630	-				-0.7
3,713,738	-	sthA	LU632_RS19585	0.16	+0.1
3,713,986	+	sthA	LU632_RS19585	0.34	+0.3
3,713,987	-	sthA	LU632_RS19585	0.34	-0.4
3,714,048	+	sthA	LU632_RS19585	0.38	+0.1
3,714,048	+	sthA	LU632_RS19585	0.38	+0.2
3,714,048	+	sthA	LU632_RS19585	0.38	-0.7
3,714,049	-	sthA	LU632_RS19585	0.38	-0.4
3,714,049	-	sthA	LU632_RS19585	0.38	+0.1
3,714,214	-	sthA	LU632_RS19585	0.50	-1.8
3,714,230	+	sthA	LU632_RS19585	0.51	-1.5
3,714,230	+	sthA	LU632_RS19585	0.51	-1.3
3,714,311	+	sthA	LU632_RS19585	0.57	-0.6
3,714,392	-	sthA	LU632_RS19585	0.63	-0.7
3,714,407	+	sthA	LU632_RS19585	0.64	+0.2
3,714,408	-	sthA	LU632_RS19585	0.64	-0.2
3,714,431	+	sthA	LU632_RS19585	0.66	+0.5
3,714,431	+	sthA	LU632_RS19585	0.66	-0.7
3,714,432	-	sthA	LU632_RS19585	0.66	+0.3
3,714,432	-	sthA	LU632_RS19585	0.66	-1.0
3,714,432	-	sthA	LU632_RS19585	0.66	-1.2
3,714,432	-	sthA	LU632_RS19585	0.66	-0.8
3,714,564	-	sthA	LU632_RS19585	0.75	-0.6
3,714,564	-	sthA	LU632_RS19585	0.75	-1.9
3,714,564	-	sthA	LU632_RS19585	0.75	-1.5
3,714,565	+	sthA	LU632_RS19585	0.75	-1.3
3,714,566	-	sthA	LU632_RS19585	0.75	-0.9
3,714,636	+	sthA	LU632_RS19585	0.80	-0.7
3,714,682	+	sthA	LU632_RS19585	0.83	-0.9
3,714,699	+	sthA	LU632_RS19585	0.85	+0.1
3,714,699	+	sthA	LU632_RS19585	0.85	-0.6
3,714,836	-				-0.6
3,714,838	+				-0.1
3,714,847	+				-0.9
3,714,847	+				-0.8
3,714,847	+				-0.3
3,714,848	-				-2.3
3,714,848	-				-0.9
3,714,912	-				-0.9
3,714,922	+				-0.4
3,714,923	-				+0.1
3,715,266	+	oxyR	LU632_RS19590	0.39	-0.4
3,715,267	-	oxyR	LU632_RS19590	0.40	+1.6
3,715,441	+	oxyR	LU632_RS19590	0.59	+1.1
3,715,441	+	oxyR	LU632_RS19590	0.59	+1.0
3,715,442	-	oxyR	LU632_RS19590	0.59	+0.6
3,715,484	-	oxyR	LU632_RS19590	0.64	-0.4