Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19560

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
3,708,240	-	trmA	LU632_RS19550	0.60	+2.1
3,708,264	-	trmA	LU632_RS19550	0.63	-0.9
3,708,321	+	trmA	LU632_RS19550	0.68	+1.3
3,708,322	-	trmA	LU632_RS19550	0.68	+0.6
3,708,338	+	trmA	LU632_RS19550	0.69	-2.2
3,708,445	-	trmA	LU632_RS19550	0.79	-1.2
3,708,533	-	trmA	LU632_RS19550	0.87	+0.1
3,708,534	+	trmA	LU632_RS19550	0.87	-0.9
3,708,534	+	trmA	LU632_RS19550	0.87	+0.0
3,708,535	-	trmA	LU632_RS19550	0.87	-0.4
3,708,536	+	trmA	LU632_RS19550	0.87	-0.3
3,708,633	-				-0.8
3,708,633	-				-0.2
3,708,677	+				-0.4
3,709,116	+		LU632_RS19555	0.39	-0.7
3,709,117	-		LU632_RS19555	0.39	+0.1
3,709,223	+				+0.1
3,709,223	+				+1.8
3,709,223	+				-0.6
3,709,224	-				+0.3
3,709,224	-				+1.2
3,709,224	-				+0.2
3,709,224	-				-0.2
3,709,224	-				+1.7
3,709,266	+				+0.8
3,709,267	-				+0.7
3,709,337	+		LU632_RS19560	0.15	-1.4
3,709,509	-		LU632_RS19560	0.36	-0.4
3,709,509	-		LU632_RS19560	0.36	+1.4
3,709,610	-		LU632_RS19560	0.49	+0.9
3,709,610	-		LU632_RS19560	0.49	-0.1
3,709,729	+		LU632_RS19560	0.64	-1.7
3,709,729	+		LU632_RS19560	0.64	-0.1
3,709,906	+		LU632_RS19560	0.87	-0.4
3,709,932	+				+0.2
3,709,933	-				-0.6
3,709,987	+				+2.4
3,710,011	-				+1.6
3,710,011	-				-0.9
3,710,050	+		LU632_RS19565	0.16	-0.6
3,710,064	-		LU632_RS19565	0.22	-0.9
3,710,064	-		LU632_RS19565	0.22	-1.9
3,710,232	-				+2.3
3,710,262	+				-0.6
3,710,300	+				+0.5
3,710,499	+		LU632_RS19570	0.19	-1.3
3,710,549	+		LU632_RS19570	0.28	+0.7
3,710,554	-		LU632_RS19570	0.29	+1.0
3,710,614	-		LU632_RS19570	0.41	+2.1
3,710,614	-		LU632_RS19570	0.41	+0.7
3,710,699	-		LU632_RS19570	0.58	-1.4
3,710,714	+		LU632_RS19570	0.61	-0.2
3,710,715	-		LU632_RS19570	0.61	-0.7
3,710,860	-		LU632_RS19570	0.90	-0.4
3,710,862	+				-0.7
3,710,862	+				-2.0
3,710,863	-				-0.6
3,710,909	+				-0.4
3,710,914	+				+1.9
3,710,914	+				+0.6
3,710,915	-				+3.5
3,710,964	-				-1.5
3,710,964	-				+0.4