Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19545

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
3,705,983	-				-2.0
3,706,871	+				+1.6
3,706,872	-				-0.1
3,706,927	-				+1.2
3,706,928	+				-0.1
3,706,929	-				+1.2
3,706,929	-				+0.9
3,707,034	-				+3.3
3,707,034	-				-0.9
3,707,035	+				-1.4
3,707,058	-				+0.4
3,707,074	+				-0.2
3,707,078	+				-0.5
3,707,079	-				+3.8
3,707,079	-				-0.7
3,707,088	-				+0.4
3,707,088	-				-0.3
3,707,091	-				-0.4
3,707,116	+				+0.8
3,707,151	-				-1.2
3,707,155	-				+0.8
3,707,284	-				+0.5
3,707,314	+				-1.2
3,707,330	-				+0.4
3,707,342	+				+0.6
3,707,372	-				+0.4
3,707,430	-				-0.0
3,707,433	+				+1.2
3,707,433	+				-0.2
3,707,434	-				-0.8
3,707,495	+				-1.1
3,707,496	-				+1.8
3,707,501	-				-1.2
3,707,515	+				-1.7
3,707,515	+				-0.2
3,707,515	+				-1.2
3,707,516	-				-0.2
3,707,531	-				+0.2
3,707,531	-				+1.5
3,707,604	+				-2.2
3,707,604	+				-2.3
3,707,639	+				-0.4
3,707,640	-				-0.5
3,707,826	-	trmA	LU632_RS19550	0.23	-0.3