Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19500

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
3,694,003	+	gorA	LU632_RS19495	0.63	+0.0
3,694,016	-	gorA	LU632_RS19495	0.64	-0.7
3,694,157	+	gorA	LU632_RS19495	0.74	-0.4
3,694,286	+	gorA	LU632_RS19495	0.84	-1.0
3,694,286	+	gorA	LU632_RS19495	0.84	+0.0
3,694,287	-	gorA	LU632_RS19495	0.84	+0.9
3,694,618	+				-0.0
3,694,619	-				-1.2
3,694,634	+				-1.0
3,694,656	+				+1.8
3,694,657	-				-1.0
3,694,657	-				+1.4
3,694,661	+				-0.1
3,694,661	+				+0.9
3,694,680	-				-0.2
3,694,821	+				+2.2
3,694,821	+				+2.3
3,694,821	+				+0.6
3,695,954	+	katG	LU632_RS19500	0.51	+0.3
3,697,050	-				-1.2
3,697,052	+				-1.7
3,697,052	+				-1.2
3,697,052	+				-1.7
3,697,053	-				+1.0
3,697,053	-				-0.4
3,697,056	+				-1.0
3,697,056	+				-0.2
3,697,056	+				+1.4
3,697,057	-				+1.2
3,697,057	-				+0.3
3,697,216	+				-0.9
3,697,217	-				-0.5
3,697,237	-				+0.8
3,697,302	-				+1.6
3,697,319	+				+0.3
3,697,361	+		LU632_RS19505	0.13	+1.0
3,697,361	+		LU632_RS19505	0.13	-0.0
3,697,466	+		LU632_RS19505	0.26	-0.9
3,697,467	-		LU632_RS19505	0.26	+0.6
3,697,467	-		LU632_RS19505	0.26	-2.3
3,697,688	+		LU632_RS19505	0.54	-0.1
3,697,691	+		LU632_RS19505	0.55	-2.0
3,697,692	-		LU632_RS19505	0.55	+1.2
3,697,702	-		LU632_RS19505	0.56	+2.0
3,697,754	-		LU632_RS19505	0.63	+0.4
3,697,760	-		LU632_RS19505	0.63	-0.0