Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19275

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
3,644,904	-				-0.5
3,644,913	+				-1.9
3,644,914	-				-0.7
3,645,067	-	ftsX	LU632_RS19270	0.18	-1.3
3,645,096	+	ftsX	LU632_RS19270	0.21	-1.7
3,645,210	-	ftsX	LU632_RS19270	0.32	-2.5
3,645,259	-	ftsX	LU632_RS19270	0.37	-0.8
3,645,261	+	ftsX	LU632_RS19270	0.37	-1.8
3,645,261	+	ftsX	LU632_RS19270	0.37	-1.6
3,645,262	-	ftsX	LU632_RS19270	0.37	-2.1
3,645,262	-	ftsX	LU632_RS19270	0.37	-0.4
3,645,262	-	ftsX	LU632_RS19270	0.37	-1.5
3,645,262	-	ftsX	LU632_RS19270	0.37	-2.4
3,645,383	+	ftsX	LU632_RS19270	0.49	-1.2
3,645,384	-	ftsX	LU632_RS19270	0.50	-2.6
3,645,425	+	ftsX	LU632_RS19270	0.54	+0.6
3,645,426	-	ftsX	LU632_RS19270	0.54	-1.9
3,645,426	-	ftsX	LU632_RS19270	0.54	-2.4
3,645,426	-	ftsX	LU632_RS19270	0.54	-0.5
3,645,428	+	ftsX	LU632_RS19270	0.54	+0.7
3,645,461	+	ftsX	LU632_RS19270	0.57	-1.7
3,645,461	+	ftsX	LU632_RS19270	0.57	-1.2
3,645,526	+	ftsX	LU632_RS19270	0.64	+2.3
3,645,527	-	ftsX	LU632_RS19270	0.64	-0.9
3,645,674	+	ftsX	LU632_RS19270	0.79	-1.7
3,645,674	+	ftsX	LU632_RS19270	0.79	-1.3
3,645,696	-	ftsX	LU632_RS19270	0.81	-2.8
3,645,710	+	ftsX	LU632_RS19270	0.82	-0.7
3,645,710	+	ftsX	LU632_RS19270	0.82	-2.6
3,645,752	+	ftsX	LU632_RS19270	0.87	-2.8
3,645,752	+	ftsX	LU632_RS19270	0.87	+0.1
3,645,753	-	ftsX	LU632_RS19270	0.87	-2.5
3,645,779	-	ftsX	LU632_RS19270	0.89	-1.2
3,645,866	+				-0.8
3,645,867	-				+0.6
3,645,970	+	ftsE	LU632_RS19275	0.14	-3.1
3,646,102	-	ftsE	LU632_RS19275	0.34	-1.5
3,646,269	+	ftsE	LU632_RS19275	0.59	-2.4
3,646,402	-	ftsE	LU632_RS19275	0.79	-2.5
3,646,518	+				-0.7
3,646,519	+				-3.2