Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18185

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
3,439,070	-				-1.6
3,439,070	-				-0.3
3,439,073	+				-0.2
3,439,074	-				+0.1
3,439,091	+				-0.0
3,439,285	+		LU632_RS18190	0.24	+0.6
3,439,351	+		LU632_RS18190	0.50	-0.3
3,439,351	+		LU632_RS18190	0.50	+2.4
3,439,352	-		LU632_RS18190	0.50	+0.9
3,439,352	-		LU632_RS18190	0.50	-4.0
3,439,356	-		LU632_RS18190	0.52	+0.3
3,439,368	-		LU632_RS18190	0.57	-2.9
3,439,387	+		LU632_RS18190	0.64	+3.8
3,439,388	-		LU632_RS18190	0.64	-1.2
3,439,390	+		LU632_RS18190	0.65	-0.0
3,439,488	+				-0.4
3,439,488	+				-1.2
3,439,491	+				-0.9
3,439,503	+				+4.7
3,439,503	+				-0.7
3,439,542	+	ykgO	LU632_RS18195	0.35	-1.0
3,439,543	-	ykgO	LU632_RS18195	0.35	+1.9
3,439,569	-	ykgO	LU632_RS18195	0.53	-0.1
3,439,571	-	ykgO	LU632_RS18195	0.55	+1.1
3,439,576	-	ykgO	LU632_RS18195	0.58	-1.0
3,439,645	+				+0.2
3,439,660	-				-0.4