Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17985

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
3,396,257	+	mltF	LU632_RS17980	0.32	+0.5
3,396,326	-	mltF	LU632_RS17980	0.37	-1.4
3,396,375	-	mltF	LU632_RS17980	0.41	-0.5
3,396,473	+	mltF	LU632_RS17980	0.47	-1.0
3,396,473	+	mltF	LU632_RS17980	0.47	-0.1
3,396,473	+	mltF	LU632_RS17980	0.47	+0.6
3,396,475	+	mltF	LU632_RS17980	0.47	-2.0
3,396,475	+	mltF	LU632_RS17980	0.47	+0.0
3,396,476	-	mltF	LU632_RS17980	0.47	+2.2
3,396,476	-	mltF	LU632_RS17980	0.47	+0.7
3,396,476	-	mltF	LU632_RS17980	0.47	-0.7
3,396,476	-	mltF	LU632_RS17980	0.47	-0.4
3,396,476	-	mltF	LU632_RS17980	0.47	+0.4
3,396,476	-	mltF	LU632_RS17980	0.47	+1.0
3,396,532	+	mltF	LU632_RS17980	0.51	-0.6
3,396,532	+	mltF	LU632_RS17980	0.51	-0.4
3,396,532	+	mltF	LU632_RS17980	0.51	+0.9
3,396,533	-	mltF	LU632_RS17980	0.51	-0.2
3,396,535	+	mltF	LU632_RS17980	0.51	+0.5
3,396,602	+	mltF	LU632_RS17980	0.56	+1.1
3,396,617	-	mltF	LU632_RS17980	0.57	-0.3
3,396,640	+	mltF	LU632_RS17980	0.59	+0.3
3,396,674	+	mltF	LU632_RS17980	0.61	+0.9
3,396,838	+	mltF	LU632_RS17980	0.72	+1.4
3,396,839	-	mltF	LU632_RS17980	0.72	-0.1
3,396,895	-	mltF	LU632_RS17980	0.76	-1.6
3,396,933	-	mltF	LU632_RS17980	0.79	+0.0
3,396,933	-	mltF	LU632_RS17980	0.79	+0.2
3,396,934	+	mltF	LU632_RS17980	0.79	+1.2
3,396,934	+	mltF	LU632_RS17980	0.79	-1.0
3,396,937	+	mltF	LU632_RS17980	0.79	-1.2
3,396,938	-	mltF	LU632_RS17980	0.79	+0.1
3,396,944	+	mltF	LU632_RS17980	0.79	-0.4
3,396,944	+	mltF	LU632_RS17980	0.79	+0.6
3,396,945	-	mltF	LU632_RS17980	0.80	+0.3
3,396,953	-	mltF	LU632_RS17980	0.80	-0.4
3,397,016	-	mltF	LU632_RS17980	0.84	-1.0
3,397,052	+	mltF	LU632_RS17980	0.87	+0.0
3,397,053	-	mltF	LU632_RS17980	0.87	-1.2
3,397,068	-	mltF	LU632_RS17980	0.88	-0.0
3,397,094	+	mltF	LU632_RS17980	0.90	-1.2
3,397,100	-				+0.4
3,397,101	-				+0.3
3,397,101	-				-0.2
3,397,101	-				-0.9
3,397,117	+				-0.6
3,397,121	+				-0.3
3,397,122	-				-2.0
3,397,122	-				-0.2
3,397,238	-				+0.4
3,397,255	+				-0.1
3,397,256	-				+1.1
3,397,256	-				+0.2
3,397,796	+				-1.1
3,397,797	-				+2.7
3,397,897	-	yfhb	LU632_RS17990	0.14	+1.3
3,397,914	-	yfhb	LU632_RS17990	0.16	+0.6
3,398,036	-	yfhb	LU632_RS17990	0.35	-0.4
3,398,052	+	yfhb	LU632_RS17990	0.37	+0.2
3,398,052	+	yfhb	LU632_RS17990	0.37	+1.6
3,398,145	-	yfhb	LU632_RS17990	0.51	-3.1
3,398,279	+	yfhb	LU632_RS17990	0.71	+0.0
3,398,356	-	yfhb	LU632_RS17990	0.82	+0.8
3,398,377	+	yfhb	LU632_RS17990	0.86	-0.1
3,398,447	+				+0.4
3,398,447	+				+0.4
3,398,448	-				-2.3
3,398,448	-				+0.2
3,398,465	-				-1.0
3,398,465	-				+1.1
3,398,546	+				+0.1
3,398,547	-				+0.1
3,398,551	+				+0.0
3,398,552	-				-0.3
3,398,595	+				-0.6
3,398,595	+				-0.9
3,398,595	+				+1.8
3,398,596	-				+0.0
3,398,601	+				+0.4
3,398,616	-				+0.1
3,398,683	+				+0.6
3,398,720	+				+0.9