Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17335

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
3,257,830	+	fruB	LU632_RS17325	0.90	-0.4
3,257,831	-	fruB	LU632_RS17325	0.90	-1.1
3,257,837	+				-0.7
3,257,842	-				-1.3
3,257,945	+				-0.9
3,257,945	+				-1.0
3,257,945	+				-0.7
3,257,946	-				-1.1
3,257,946	-				-1.2
3,257,946	-				-2.5
3,257,946	-				-1.9
3,257,946	-				+0.7
3,258,073	-				+0.6
3,258,237	-				-0.5
3,258,241	+				+0.4
3,258,313	-		LU632_RS17330	0.17	-2.2
3,258,313	-		LU632_RS17330	0.17	+1.4
3,258,313	-		LU632_RS17330	0.17	-0.1
3,258,422	-		LU632_RS17330	0.37	+0.5
3,258,425	+		LU632_RS17330	0.38	+1.1
3,258,456	+		LU632_RS17330	0.44	+0.0
3,258,458	+		LU632_RS17330	0.44	-0.2
3,258,504	+		LU632_RS17330	0.53	-0.0
3,258,552	-		LU632_RS17330	0.62	-0.1
3,258,642	+		LU632_RS17330	0.79	-2.0
3,258,642	+		LU632_RS17330	0.79	+0.2
3,258,643	-		LU632_RS17330	0.79	-0.6
3,258,646	+		LU632_RS17330	0.79	-0.2
3,258,647	-		LU632_RS17330	0.80	+0.4
3,258,690	+		LU632_RS17330	0.88	+0.5
3,259,597	-				-0.8
3,259,597	-				-0.8
3,259,944	+		LU632_RS17340	0.64	-0.4
3,259,944	+		LU632_RS17340	0.64	-1.8
3,259,944	+		LU632_RS17340	0.64	+0.1
3,259,946	+		LU632_RS17340	0.65	-0.3
3,259,946	+		LU632_RS17340	0.65	+0.3
3,259,946	+		LU632_RS17340	0.65	+0.7
3,259,946	+		LU632_RS17340	0.65	-0.0
3,259,946	+		LU632_RS17340	0.65	+2.2
3,260,037	-				-1.3
3,260,037	-				-1.2