Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17215

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
3,237,147	+		LU632_RS17200	0.90	-0.6
3,237,147	+		LU632_RS17200	0.90	+1.3
3,237,147	+		LU632_RS17200	0.90	-2.0
3,237,161	-				+0.1
3,237,174	+				-0.0
3,237,174	+				+3.0
3,237,174	+				-0.5
3,237,174	+				+3.5
3,237,175	-				+0.3
3,237,175	-				-2.4
3,237,175	-				+0.5
3,237,175	-				+0.6
3,237,283	-				-1.6
3,237,306	+				+0.3
3,237,308	+				+2.3
3,237,399	+		LU632_RS17205	0.36	+2.5
3,237,400	-		LU632_RS17205	0.36	+1.0
3,237,403	-		LU632_RS17205	0.38	-1.9
3,238,187	+		LU632_RS17215	0.41	-0.0
3,238,333	+				+0.1
3,238,333	+				-0.5
3,238,338	+				-0.3
3,238,381	-				-1.6
3,238,381	-				-0.3
3,238,461	+		LU632_RS17220	0.16	-1.0
3,238,485	+		LU632_RS17220	0.29	-0.5
3,238,632	+				+1.1
3,238,633	-				+2.7
3,238,642	-				+0.3
3,238,726	-		LU632_RS17225	0.22	-0.6
3,238,770	-		LU632_RS17225	0.33	-0.3
3,238,778	-		LU632_RS17225	0.35	-1.5
3,238,845	+		LU632_RS17225	0.52	+1.2
3,238,849	+		LU632_RS17225	0.53	+1.5
3,238,849	+		LU632_RS17225	0.53	+0.2
3,238,849	+		LU632_RS17225	0.53	-0.8
3,238,977	+		LU632_RS17225	0.84	-1.6
3,239,280	+		LU632_RS17230	0.57	-1.5
3,239,280	+		LU632_RS17230	0.57	-0.0