Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17195

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
3,234,340	+		LU632_RS17185	0.29	+1.0
3,234,341	-		LU632_RS17185	0.29	+5.4
3,234,360	+		LU632_RS17185	0.32	+1.5
3,234,361	-		LU632_RS17185	0.32	-1.0
3,234,361	-		LU632_RS17185	0.32	+0.7
3,234,431	-		LU632_RS17185	0.44	-0.0
3,234,560	+		LU632_RS17185	0.65	+1.5
3,234,561	-		LU632_RS17185	0.65	-0.5
3,234,597	-		LU632_RS17185	0.71	+0.2
3,234,887	+				-0.2
3,234,888	-				+0.5
3,234,890	-				+0.5
3,234,953	+				+1.0
3,234,953	+				-0.7
3,234,953	+				+1.0
3,234,954	-				+3.1
3,234,954	-				-0.8
3,234,956	-				+1.7
3,234,974	+				-1.7
3,234,975	-				+0.2
3,236,446	+				+0.2
3,236,542	-		LU632_RS17200	0.21	-0.3
3,236,552	-		LU632_RS17200	0.22	-0.7
3,236,563	+		LU632_RS17200	0.23	-0.2
3,236,564	-		LU632_RS17200	0.23	-0.8
3,236,564	-		LU632_RS17200	0.23	-0.0
3,236,565	+		LU632_RS17200	0.23	-1.2
3,236,566	-		LU632_RS17200	0.23	-0.2
3,236,734	+		LU632_RS17200	0.42	+0.4
3,236,737	+		LU632_RS17200	0.43	+0.4
3,236,738	-		LU632_RS17200	0.43	+0.4
3,236,892	+		LU632_RS17200	0.61	-0.8
3,236,897	+		LU632_RS17200	0.61	+0.4
3,236,897	+		LU632_RS17200	0.61	-0.4
3,236,897	+		LU632_RS17200	0.61	+0.4
3,236,898	-		LU632_RS17200	0.61	+0.8
3,236,959	+		LU632_RS17200	0.68	-0.5
3,237,011	-		LU632_RS17200	0.74	-0.8
3,237,147	+		LU632_RS17200	0.90	-0.6
3,237,147	+		LU632_RS17200	0.90	+1.3
3,237,147	+		LU632_RS17200	0.90	-2.0
3,237,161	-				+0.1
3,237,174	+				-0.0
3,237,174	+				+3.0
3,237,174	+				-0.5
3,237,174	+				+3.5
3,237,175	-				+0.3
3,237,175	-				-2.4
3,237,175	-				+0.5
3,237,175	-				+0.6