Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16835

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
3,171,500	+				-1.3
3,171,501	-				+0.3
3,171,501	-				-0.6
3,171,501	-				+0.3
3,171,501	-				+2.4
3,171,501	-				+1.4
3,171,636	+				+0.7
3,171,653	+				+0.6
3,171,713	+				+1.6
3,171,713	+				+0.1
3,171,805	-				-0.2
3,171,805	-				-0.7
3,171,809	-				+0.0
3,171,871	-				+0.3
3,172,011	+				-1.0
3,172,012	-				+0.5
3,172,101	-				-0.6
3,172,132	-				-0.5
3,172,132	-				-0.1
3,172,149	+				+0.4
3,172,150	-				+0.2
3,172,166	+				+0.5
3,172,210	+				+1.4
3,172,211	+				-0.3
3,172,216	+				+1.3
3,172,217	-				-0.6
3,172,217	-				-1.3
3,172,238	+				-0.6
3,172,239	-				+0.4
3,172,242	+				-0.6
3,172,242	+				-0.8
3,172,353	+				-0.4
3,172,353	+				+0.2
3,172,354	-				+0.7
3,172,381	+				+0.4
3,172,394	+				-1.8
3,172,394	+				-1.2
3,172,490	+	mprA	LU632_RS16835	0.15	-3.0
3,172,596	+	mprA	LU632_RS16835	0.35	-0.9
3,172,623	+	mprA	LU632_RS16835	0.40	-0.0
3,172,791	+	mprA	LU632_RS16835	0.72	-2.2
3,172,791	+	mprA	LU632_RS16835	0.72	+0.4
3,172,792	-	mprA	LU632_RS16835	0.72	-0.8
3,172,792	-	mprA	LU632_RS16835	0.72	-1.3
3,172,792	-	mprA	LU632_RS16835	0.72	-1.1
3,172,884	-	mprA	LU632_RS16835	0.89	-2.2
3,172,884	-	mprA	LU632_RS16835	0.89	-2.2
3,172,959	+				-0.8
3,172,960	-				-1.6
3,172,962	+				+0.4
3,172,962	+				-1.0
3,172,962	+				+0.9
3,172,962	+				-0.0
3,172,962	+				-0.4
3,172,963	-				-0.9
3,172,963	-				-0.7
3,172,966	+				+0.6
3,172,966	+				+0.0
3,172,967	-				-1.1
3,172,967	-				+0.2
3,172,967	-				-2.1
3,173,012	-				+0.8
3,173,089	-				-0.4
3,173,089	-				-1.2
3,173,118	+				+2.1
3,173,119	-				+0.6
3,173,135	-				+1.3
3,173,160	+		LU632_RS16840	0.15	-0.6
3,173,240	+		LU632_RS16840	0.30	+0.6
3,173,240	+		LU632_RS16840	0.30	-1.4
3,173,240	+		LU632_RS16840	0.30	-0.5
3,173,240	+		LU632_RS16840	0.30	-1.8
3,173,240	+		LU632_RS16840	0.30	-1.7
3,173,241	-		LU632_RS16840	0.30	+0.1
3,173,309	-		LU632_RS16840	0.43	+0.4
3,173,312	-		LU632_RS16840	0.44	+1.1
3,173,354	-		LU632_RS16840	0.52	-0.1
3,173,440	+		LU632_RS16840	0.68	-0.1
3,173,462	-		LU632_RS16840	0.72	+4.5
3,173,619	-				+0.9