Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16815

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
3,165,838	+	nrdE	LU632_RS16810	0.54	+0.5
3,165,838	+	nrdE	LU632_RS16810	0.54	+0.7
3,165,870	+	nrdE	LU632_RS16810	0.56	+0.7
3,165,944	+	nrdE	LU632_RS16810	0.60	+2.1
3,166,129	+	nrdE	LU632_RS16810	0.68	+0.3
3,166,129	+	nrdE	LU632_RS16810	0.68	-0.8
3,166,130	-	nrdE	LU632_RS16810	0.68	+0.8
3,166,130	-	nrdE	LU632_RS16810	0.68	-0.1
3,166,130	-	nrdE	LU632_RS16810	0.68	+0.9
3,166,135	+	nrdE	LU632_RS16810	0.69	+0.7
3,166,136	-	nrdE	LU632_RS16810	0.69	+1.9
3,166,136	-	nrdE	LU632_RS16810	0.69	-1.1
3,166,136	-	nrdE	LU632_RS16810	0.69	-0.8
3,166,148	-	nrdE	LU632_RS16810	0.69	+0.3
3,166,148	-	nrdE	LU632_RS16810	0.69	+0.3
3,166,150	+	nrdE	LU632_RS16810	0.69	+1.8
3,166,249	+	nrdE	LU632_RS16810	0.74	-1.6
3,166,249	+	nrdE	LU632_RS16810	0.74	-0.1
3,166,250	-	nrdE	LU632_RS16810	0.74	+0.7
3,166,314	-	nrdE	LU632_RS16810	0.77	+0.1
3,166,347	-	nrdE	LU632_RS16810	0.79	-0.5
3,166,375	+	nrdE	LU632_RS16810	0.80	+0.8
3,166,421	-	nrdE	LU632_RS16810	0.82	+0.6
3,166,434	+	nrdE	LU632_RS16810	0.83	-0.7
3,166,435	-	nrdE	LU632_RS16810	0.83	+1.5
3,166,501	+	nrdE	LU632_RS16810	0.86	-0.5
3,166,502	-	nrdE	LU632_RS16810	0.86	-0.3
3,166,519	-	nrdE	LU632_RS16810	0.87	+1.6
3,166,578	+				-0.3
3,166,584	+				-0.3
3,166,585	-				-1.1
3,166,585	-				+0.1
3,166,588	+				-0.2
3,166,588	+				-0.6
3,166,588	+				-0.3
3,166,589	-				+0.7
3,166,669	-				-0.8
3,166,671	+				+0.2
3,166,672	-				+0.8
3,166,684	+				-0.4
3,166,684	+				-0.8
3,166,684	+				-0.3
3,166,715	-				+3.0
3,166,717	+				+0.4
3,166,717	+				+2.6
3,166,717	+				+0.5
3,166,718	-				-0.3
3,166,718	-				+1.5
3,166,750	-				-0.2
3,166,750	-				+1.2
3,166,783	+				-0.1
3,166,844	+				-0.2
3,166,845	-				+0.1
3,167,099	+	nrdF	LU632_RS16815	0.28	-0.2
3,167,108	+	nrdF	LU632_RS16815	0.29	-0.6
3,167,117	+	nrdF	LU632_RS16815	0.30	+1.7
3,167,143	-	nrdF	LU632_RS16815	0.33	+1.0
3,167,193	+	nrdF	LU632_RS16815	0.38	+0.3
3,167,193	+	nrdF	LU632_RS16815	0.38	+0.3
3,167,193	+	nrdF	LU632_RS16815	0.38	-1.2
3,167,193	+	nrdF	LU632_RS16815	0.38	+0.5
3,167,194	-	nrdF	LU632_RS16815	0.38	-0.1
3,167,229	-	nrdF	LU632_RS16815	0.42	-0.1
3,167,229	-	nrdF	LU632_RS16815	0.42	-1.5
3,167,229	-	nrdF	LU632_RS16815	0.42	-0.7
3,167,229	-	nrdF	LU632_RS16815	0.42	+1.4
3,167,254	-	nrdF	LU632_RS16815	0.44	+1.5
3,167,257	-	nrdF	LU632_RS16815	0.44	-0.5
3,167,317	-	nrdF	LU632_RS16815	0.51	-0.5
3,167,328	+	nrdF	LU632_RS16815	0.52	-0.3
3,167,410	+	nrdF	LU632_RS16815	0.60	+1.4
3,167,418	+	nrdF	LU632_RS16815	0.61	-0.5
3,167,421	+	nrdF	LU632_RS16815	0.62	+0.5
3,167,421	+	nrdF	LU632_RS16815	0.62	-0.9
3,167,422	-	nrdF	LU632_RS16815	0.62	+0.5
3,167,422	-	nrdF	LU632_RS16815	0.62	+0.9
3,167,431	-	nrdF	LU632_RS16815	0.63	-1.1
3,167,433	-	nrdF	LU632_RS16815	0.63	-1.1
3,167,504	-	nrdF	LU632_RS16815	0.70	-2.0
3,167,513	-	nrdF	LU632_RS16815	0.71	-0.6
3,167,515	+	nrdF	LU632_RS16815	0.71	+1.3
3,167,515	+	nrdF	LU632_RS16815	0.71	+1.5
3,167,516	-	nrdF	LU632_RS16815	0.71	+1.9
3,167,516	-	nrdF	LU632_RS16815	0.71	+2.1
3,167,516	-	nrdF	LU632_RS16815	0.71	-0.6
3,167,516	-	nrdF	LU632_RS16815	0.71	-0.3
3,167,551	-	nrdF	LU632_RS16815	0.75	+0.2
3,167,597	+	nrdF	LU632_RS16815	0.80	+0.3
3,167,598	-	nrdF	LU632_RS16815	0.80	-0.5
3,167,598	-	nrdF	LU632_RS16815	0.80	+0.4
3,167,598	-	nrdF	LU632_RS16815	0.80	-0.1
3,167,606	+	nrdF	LU632_RS16815	0.81	+2.6
3,167,653	+	nrdF	LU632_RS16815	0.86	+1.5
3,167,759	-				+2.0
3,167,867	-				-1.2
3,167,950	-				+1.1
3,168,089	-				+1.0
3,168,157	+				+1.8
3,168,333	+	proV	LU632_RS16820	0.14	-1.1
3,168,450	+	proV	LU632_RS16820	0.24	-0.6
3,168,538	-	proV	LU632_RS16820	0.31	-0.2
3,168,564	-	proV	LU632_RS16820	0.33	+0.9
3,168,613	-	proV	LU632_RS16820	0.37	-1.1
3,168,613	-	proV	LU632_RS16820	0.37	+0.2
3,168,721	-	proV	LU632_RS16820	0.46	+1.7
3,168,721	-	proV	LU632_RS16820	0.46	+1.1
3,168,723	+	proV	LU632_RS16820	0.46	-0.2
3,168,723	+	proV	LU632_RS16820	0.46	-0.8
3,168,723	+	proV	LU632_RS16820	0.46	+0.5
3,168,723	+	proV	LU632_RS16820	0.46	+0.8