Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16480

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
3,117,920	+	arnT	LU632_RS16475	0.43	-0.5
3,117,920	+	arnT	LU632_RS16475	0.43	+0.5
3,117,920	+	arnT	LU632_RS16475	0.43	+0.7
3,117,920	+	arnT	LU632_RS16475	0.43	-0.3
3,117,920	+	arnT	LU632_RS16475	0.43	-0.3
3,117,920	+	arnT	LU632_RS16475	0.43	-0.6
3,117,921	-	arnT	LU632_RS16475	0.43	+2.4
3,117,921	-	arnT	LU632_RS16475	0.43	-1.7
3,117,921	-	arnT	LU632_RS16475	0.43	+0.5
3,117,921	-	arnT	LU632_RS16475	0.43	-0.9
3,117,921	-	arnT	LU632_RS16475	0.43	-1.1
3,117,986	+	arnT	LU632_RS16475	0.47	-1.7
3,118,088	+	arnT	LU632_RS16475	0.53	+0.5
3,118,088	+	arnT	LU632_RS16475	0.53	-2.5
3,118,088	+	arnT	LU632_RS16475	0.53	-0.8
3,118,089	-	arnT	LU632_RS16475	0.53	-0.2
3,118,089	-	arnT	LU632_RS16475	0.53	-2.5
3,118,089	-	arnT	LU632_RS16475	0.53	-0.9
3,118,089	-	arnT	LU632_RS16475	0.53	+0.5
3,118,140	+	arnT	LU632_RS16475	0.56	-1.5
3,118,141	-	arnT	LU632_RS16475	0.56	+0.7
3,118,263	+	arnT	LU632_RS16475	0.64	-0.6
3,118,366	+	arnT	LU632_RS16475	0.70	-2.0
3,118,367	-	arnT	LU632_RS16475	0.70	-2.9
3,118,421	+	arnT	LU632_RS16475	0.73	-0.1
3,118,431	+	arnT	LU632_RS16475	0.74	-0.9
3,118,431	+	arnT	LU632_RS16475	0.74	+2.5
3,118,432	-	arnT	LU632_RS16475	0.74	-0.7
3,118,432	-	arnT	LU632_RS16475	0.74	-0.6
3,118,468	+	arnT	LU632_RS16475	0.76	+0.6
3,118,475	+	arnT	LU632_RS16475	0.76	-1.9
3,118,476	-	arnT	LU632_RS16475	0.76	-1.8
3,118,540	-	arnT	LU632_RS16475	0.80	-1.8
3,118,629	+	arnT	LU632_RS16475	0.86	+0.5
3,118,694	+	arnT	LU632_RS16475	0.90	-3.1
3,119,075	+		LU632_RS16480	0.23	-1.5
3,119,075	+		LU632_RS16480	0.23	-0.7
3,119,076	-		LU632_RS16480	0.23	-0.1
3,119,118	-		LU632_RS16480	0.28	-2.9
3,119,126	+		LU632_RS16480	0.28	-0.7
3,119,198	+		LU632_RS16480	0.36	-2.5
3,119,199	-		LU632_RS16480	0.37	-0.3
3,119,207	+		LU632_RS16480	0.37	+0.5
3,119,237	+		LU632_RS16480	0.41	+1.5
3,119,260	+		LU632_RS16480	0.43	+1.5
3,119,261	-		LU632_RS16480	0.44	-0.9
3,119,510	+		LU632_RS16480	0.71	-1.9
3,119,636	+		LU632_RS16480	0.85	-2.0
3,119,636	+		LU632_RS16480	0.85	-0.7
3,119,637	-		LU632_RS16480	0.86	-2.1
3,119,679	+				-0.1
3,119,742	+				-0.5
3,119,742	+				-2.4
3,119,816	-				-1.0
3,119,856	-				-0.5
3,119,914	+				-1.5
3,119,919	+				+0.1
3,119,919	+				-0.5
3,119,920	-				-1.3
3,119,922	+				-1.5
3,119,922	+				-2.0
3,119,922	+				-0.6
3,119,923	-				-0.3
3,119,923	-				-0.5
3,119,923	-				+1.8
3,120,095	-	arnA	LU632_RS16485	0.17	-1.9
3,120,357	+	arnA	LU632_RS16485	0.30	-0.4
3,120,358	-	arnA	LU632_RS16485	0.30	-1.1
3,120,373	+	arnA	LU632_RS16485	0.31	-2.0
3,120,373	+	arnA	LU632_RS16485	0.31	-0.9
3,120,376	+	arnA	LU632_RS16485	0.31	-2.1
3,120,377	-	arnA	LU632_RS16485	0.31	-1.3
3,120,377	-	arnA	LU632_RS16485	0.31	+0.9
3,120,377	-	arnA	LU632_RS16485	0.31	+1.0
3,120,714	+	arnA	LU632_RS16485	0.48	-1.6
3,120,715	-	arnA	LU632_RS16485	0.48	-2.0
3,120,715	-	arnA	LU632_RS16485	0.48	-1.9
3,120,719	-	arnA	LU632_RS16485	0.48	-1.6
3,120,761	-	arnA	LU632_RS16485	0.50	-1.1