Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15745

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
2,979,329	-	pncC	LU632_RS15740	0.55	-0.5
2,979,329	-	pncC	LU632_RS15740	0.55	+0.7
2,979,386	-	pncC	LU632_RS15740	0.66	-0.9
2,979,386	-	pncC	LU632_RS15740	0.66	-1.4
2,979,386	-	pncC	LU632_RS15740	0.66	-1.8
2,979,438	-	pncC	LU632_RS15740	0.77	-0.2
2,979,654	+				-0.4
2,979,655	-				-0.2
2,979,659	-				+0.9
2,979,662	+				+0.4
2,979,677	-				-0.2
2,979,682	-				+0.6
2,979,720	-				-0.1
2,979,724	+				+0.3
2,979,732	+				-0.6
2,979,733	-				-1.1
2,979,733	-				+1.3
2,979,804	-				+1.3
2,979,833	-				-1.2
2,979,845	+				+0.4
2,979,861	-				+0.2
2,979,867	-				-0.0
2,979,885	+				-0.1
2,979,886	-				-0.8
2,979,917	+				-0.1
2,979,918	-				+0.8
2,979,964	+				+0.4
2,979,983	-				+0.4
2,980,060	-				+2.8
2,980,103	-				+1.0
2,980,170	-				+1.6
2,980,170	-				-1.0
2,980,172	+				-1.6
2,980,193	+				-1.8
2,980,277	+				+0.2
2,980,293	+				-1.1
2,980,335	-	mltB	LU632_RS15745	0.10	+0.2
2,980,437	+	mltB	LU632_RS15745	0.20	-0.7
2,980,437	+	mltB	LU632_RS15745	0.20	+0.1
2,980,438	-	mltB	LU632_RS15745	0.20	+1.3
2,980,440	-	mltB	LU632_RS15745	0.20	-1.1
2,980,533	-	mltB	LU632_RS15745	0.29	-0.2
2,980,616	+	mltB	LU632_RS15745	0.36	-0.6
2,980,616	+	mltB	LU632_RS15745	0.36	+0.5
2,980,629	+	mltB	LU632_RS15745	0.38	+1.3
2,980,837	-	mltB	LU632_RS15745	0.57	-0.1
2,980,845	+	mltB	LU632_RS15745	0.58	+0.8
2,980,865	+	mltB	LU632_RS15745	0.60	-0.0
2,980,865	+	mltB	LU632_RS15745	0.60	+0.4
2,980,865	+	mltB	LU632_RS15745	0.60	+0.9
2,980,865	+	mltB	LU632_RS15745	0.60	+1.5
2,980,866	-	mltB	LU632_RS15745	0.60	+0.7
2,980,866	-	mltB	LU632_RS15745	0.60	+0.8
2,980,866	-	mltB	LU632_RS15745	0.60	+1.5
2,980,866	-	mltB	LU632_RS15745	0.60	+0.8
2,980,950	+	mltB	LU632_RS15745	0.67	+0.5
2,980,977	+	mltB	LU632_RS15745	0.70	+1.6
2,980,978	-	mltB	LU632_RS15745	0.70	+1.4
2,980,998	-	mltB	LU632_RS15745	0.72	+0.9
2,981,167	-	mltB	LU632_RS15745	0.88	+1.0
2,981,167	-	mltB	LU632_RS15745	0.88	+0.1
2,981,279	-				-0.2
2,981,295	-				+0.3
2,981,307	-				-1.6
2,981,311	-				-1.4
2,981,311	-				+0.4
2,981,327	-				-0.1
2,981,339	-				+0.6
2,981,372	+				+0.4
2,981,377	-				+0.8
2,981,377	-				+0.4
2,981,383	-				+0.2
2,981,482	-				-1.2
2,981,567	+				+0.2
2,981,662	+		LU632_RS15750	0.26	+2.1
2,981,662	+		LU632_RS15750	0.26	+1.2
2,981,663	-		LU632_RS15750	0.26	+2.8
2,981,680	+		LU632_RS15750	0.29	+1.3
2,981,701	+		LU632_RS15750	0.32	+1.4
2,981,701	+		LU632_RS15750	0.32	+0.6
2,981,701	+		LU632_RS15750	0.32	+0.1
2,981,702	-		LU632_RS15750	0.32	-1.1
2,981,850	-		LU632_RS15750	0.57	-0.8
2,981,877	-		LU632_RS15750	0.62	-1.8
2,981,895	+		LU632_RS15750	0.65	-1.9
2,981,895	+		LU632_RS15750	0.65	-0.2
2,981,896	-		LU632_RS15750	0.65	-1.1
2,981,896	-		LU632_RS15750	0.65	+0.1
2,981,896	-		LU632_RS15750	0.65	-1.8
2,981,972	-		LU632_RS15750	0.78	-0.3
2,982,057	+				+0.4
2,982,057	+				-0.6
2,982,087	-				+1.2
2,982,087	-				-0.7
2,982,088	+				-1.1
2,982,088	+				-0.5
2,982,089	-				+0.4
2,982,142	+				-1.7
2,982,154	-				+2.0
2,982,222	-				+0.4