Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14615

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
2,778,748	-	pepT	LU632_RS14605	0.82	-0.1
2,778,776	-	pepT	LU632_RS14605	0.84	+1.0
2,778,877	+				+0.2
2,778,878	-				-0.4
2,778,932	+				+0.8
2,778,961	+				-0.4
2,778,962	-				-0.6
2,778,967	-				+1.3
2,779,011	-				-1.4
2,779,024	+				-0.4
2,779,028	+				+0.5
2,779,028	+				+0.1
2,779,029	-				-1.5
2,779,058	+				-2.2
2,779,058	+				-0.6
2,779,071	-				-0.4
2,779,116	+				-0.5
2,779,116	+				-0.7
2,779,128	+		LU632_RS14610	0.11	-0.1
2,779,129	-		LU632_RS14610	0.11	+1.0
2,779,133	+		LU632_RS14610	0.12	+0.4
2,779,134	-		LU632_RS14610	0.12	-0.8
2,779,382	+		LU632_RS14610	0.58	-0.1
2,779,457	+		LU632_RS14610	0.72	+0.9
2,779,635	-				-0.6
2,779,635	-				-0.4
2,779,669	+				+0.3
2,779,669	+				+0.4
2,779,690	-				+0.4
2,779,696	+				+0.0
2,779,696	+				-0.8
2,779,701	+				+0.2
2,779,702	-				-1.0
2,779,708	+				-1.2
2,779,709	-				-0.6
2,779,794	+				+0.6
2,779,862	+		LU632_RS14615	0.14	-1.3
2,779,863	-		LU632_RS14615	0.14	-0.0
2,780,032	+		LU632_RS14615	0.30	+0.7
2,780,074	-		LU632_RS14615	0.34	+0.1
2,780,074	-		LU632_RS14615	0.34	+0.1
2,780,074	-		LU632_RS14615	0.34	+0.1
2,780,103	+		LU632_RS14615	0.37	-2.1
2,780,159	+		LU632_RS14615	0.43	-1.3
2,780,159	+		LU632_RS14615	0.43	+0.9
2,780,160	-		LU632_RS14615	0.43	+0.4
2,780,161	+		LU632_RS14615	0.43	+0.8
2,780,161	+		LU632_RS14615	0.43	-0.8
2,780,161	+		LU632_RS14615	0.43	+0.5
2,780,161	+		LU632_RS14615	0.43	-0.8
2,780,161	+		LU632_RS14615	0.43	-1.9
2,780,162	-		LU632_RS14615	0.43	+0.0
2,780,162	-		LU632_RS14615	0.43	+2.7
2,780,163	+		LU632_RS14615	0.43	-0.1
2,780,163	+		LU632_RS14615	0.43	-1.2
2,780,164	-		LU632_RS14615	0.43	-0.2
2,780,164	-		LU632_RS14615	0.43	-0.8
2,780,164	-		LU632_RS14615	0.43	-0.5
2,780,164	-		LU632_RS14615	0.43	+0.2
2,780,267	+		LU632_RS14615	0.54	-0.8
2,780,324	-		LU632_RS14615	0.59	-0.3
2,780,341	+		LU632_RS14615	0.61	+1.1
2,780,341	+		LU632_RS14615	0.61	-0.1
2,780,369	-		LU632_RS14615	0.64	+0.9
2,780,369	-		LU632_RS14615	0.64	+0.5
2,780,411	+		LU632_RS14615	0.68	-2.2
2,780,411	+		LU632_RS14615	0.68	+0.1
2,780,411	+		LU632_RS14615	0.68	+1.3
2,780,412	-		LU632_RS14615	0.68	-0.5
2,780,412	-		LU632_RS14615	0.68	-0.6
2,780,494	-		LU632_RS14615	0.76	-1.6
2,780,533	+		LU632_RS14615	0.80	-1.6
2,780,587	+		LU632_RS14615	0.85	-0.0
2,780,664	+				+0.4
2,780,695	-				-0.1
2,780,727	-				-0.7
2,780,735	-				-0.1
2,780,753	-				-0.7
2,780,790	+				-0.9
2,780,804	-				-0.6
2,780,871	-				-0.9
2,780,871	-				-0.9
2,780,882	+				-1.8
2,780,901	+				-0.8
2,780,901	+				-0.1
2,780,924	+				-0.3
2,780,927	-				+0.6
2,780,953	+				-0.6
2,780,953	+				-0.3
2,780,994	-				-0.0
2,780,996	-				-0.8
2,781,048	-		LU632_RS14620	0.13	+3.5
2,781,213	-		LU632_RS14620	0.31	+1.6
2,781,282	-		LU632_RS14620	0.39	-0.2
2,781,298	-		LU632_RS14620	0.40	-0.9
2,781,347	+		LU632_RS14620	0.46	-0.8
2,781,352	-		LU632_RS14620	0.46	+2.5
2,781,352	-		LU632_RS14620	0.46	-0.4
2,781,359	+		LU632_RS14620	0.47	-0.5
2,781,565	-		LU632_RS14620	0.69	-0.3
2,781,578	+		LU632_RS14620	0.71	+0.8
2,781,596	+		LU632_RS14620	0.73	+0.3
2,781,721	-		LU632_RS14620	0.86	+0.0