Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14260

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
2,730,623	-				-0.6
2,730,623	-				+2.4
2,730,642	+				-0.5
2,730,642	+				+1.0
2,730,704	+		LU632_RS14260	0.17	-0.9
2,730,727	+		LU632_RS14260	0.21	-2.4
2,730,828	+		LU632_RS14260	0.36	-1.0
2,730,828	-		LU632_RS14260	0.36	+0.4
2,730,829	-		LU632_RS14260	0.37	+0.4
2,730,829	-		LU632_RS14260	0.37	-0.3
2,730,862	+		LU632_RS14260	0.42	-0.4
2,730,901	+		LU632_RS14260	0.48	+0.1
2,730,919	-		LU632_RS14260	0.51	-0.4
2,730,952	+		LU632_RS14260	0.56	+0.1
2,730,953	-		LU632_RS14260	0.56	+0.8
2,730,976	+		LU632_RS14260	0.59	-1.6
2,730,976	+		LU632_RS14260	0.59	-0.3
2,730,976	+		LU632_RS14260	0.59	-1.2
2,731,041	+		LU632_RS14260	0.69	+0.2
2,731,041	+		LU632_RS14260	0.69	-0.5
2,731,041	+		LU632_RS14260	0.69	-0.6
2,731,041	+		LU632_RS14260	0.69	-0.2
2,731,041	+		LU632_RS14260	0.69	-1.8
2,731,041	+		LU632_RS14260	0.69	+2.2
2,731,041	+		LU632_RS14260	0.69	-0.1
2,731,042	-		LU632_RS14260	0.70	+1.3
2,731,042	-		LU632_RS14260	0.70	+1.4
2,731,042	-		LU632_RS14260	0.70	+0.2
2,731,042	-		LU632_RS14260	0.70	-0.7
2,731,042	-		LU632_RS14260	0.70	+0.6
2,731,042	-		LU632_RS14260	0.70	-1.8
2,731,042	-		LU632_RS14260	0.70	+0.7
2,731,042	-		LU632_RS14260	0.70	-0.1
2,731,043	+		LU632_RS14260	0.70	-0.4
2,731,043	+		LU632_RS14260	0.70	+1.3
2,731,044	-		LU632_RS14260	0.70	+0.1
2,731,044	-		LU632_RS14260	0.70	+1.7
2,731,044	-		LU632_RS14260	0.70	-0.3
2,731,046	-		LU632_RS14260	0.70	-1.1
2,731,046	-		LU632_RS14260	0.70	+0.5
2,731,092	+		LU632_RS14260	0.77	-0.6
2,731,271	+				-2.1
2,731,272	-				-2.0
2,731,328	+				-1.2
2,731,397	-				+0.4
2,731,405	+				-0.2
2,731,441	+				+0.7
2,731,441	+				+1.1
2,731,441	+				-1.0
2,731,463	-				-0.2
2,731,466	+				-2.5
2,731,467	-				-0.8
2,731,467	-				-0.8
2,731,504	-				-0.6
2,731,515	-				-0.6
2,731,556	-				-1.0
2,731,564	-				+0.6
2,731,646	+				+1.1
2,731,647	-				+0.7
2,731,658	-				+0.8
2,731,810	-		LU632_RS14265	0.11	+0.9
2,731,821	-		LU632_RS14265	0.14	-0.6
2,731,821	-		LU632_RS14265	0.14	+0.1
2,731,990	-		LU632_RS14265	0.52	+0.4
2,731,995	+		LU632_RS14265	0.53	-0.1
2,732,086	-		LU632_RS14265	0.73	+1.2
2,732,107	+		LU632_RS14265	0.78	-0.3
2,732,140	+		LU632_RS14265	0.85	+1.4