Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13625

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
2,601,614	-		LU632_RS13615	0.45	-2.6
2,601,730	-		LU632_RS13615	0.66	+0.0
2,601,730	-		LU632_RS13615	0.66	-2.8
2,601,835	+		LU632_RS13615	0.85	+0.1
2,601,927	+				+0.7
2,602,035	+		LU632_RS13620	0.33	-0.2
2,602,067	+		LU632_RS13620	0.46	-0.4
2,602,182	-				-2.4
2,602,226	-				+0.3
2,602,234	-				+0.0
2,602,234	-				-0.7
2,602,269	-				+0.3
2,602,329	-				-1.4
2,602,340	+				+2.3
2,602,341	-				-2.6
2,602,358	+				-0.3
2,602,499	+				+0.6
2,602,536	-				+1.6
2,602,618	-		LU632_RS13625	0.12	+0.5
2,602,684	-		LU632_RS13625	0.38	+0.2
2,602,794	-		LU632_RS13625	0.80	+3.6
2,602,823	+				+0.5
2,602,823	+				+0.4
2,602,833	+				-0.8
2,602,833	+				+0.5
2,602,906	-				+4.4
2,603,036	+		LU632_RS13630	0.26	-0.9
2,603,087	+		LU632_RS13630	0.39	-1.3
2,603,153	+		LU632_RS13630	0.57	-0.6
2,603,169	-		LU632_RS13630	0.61	-0.9
2,603,266	+		LU632_RS13630	0.87	-2.0
2,603,286	+				+0.6
2,603,286	+				-0.3
2,603,287	-				-0.4
2,603,287	-				+0.5
2,603,287	-				-0.2
2,603,329	-				+0.3
2,603,414	+				+1.5
2,603,430	+				+0.2
2,603,448	+				-1.4
2,603,496	-		LU632_RS13635	0.29	-0.0
2,603,526	-		LU632_RS13635	0.49	-0.2
2,603,528	+		LU632_RS13635	0.50	-0.4