Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13470

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
2,568,248	-	cmoB	LU632_RS13460	0.65	+0.6
2,568,345	+	cmoB	LU632_RS13460	0.75	-1.3
2,568,359	+	cmoB	LU632_RS13460	0.76	-1.0
2,568,360	-	cmoB	LU632_RS13460	0.76	+0.5
2,568,392	-	cmoB	LU632_RS13460	0.79	+0.3
2,568,657	+				-1.0
2,568,666	+				+0.5
2,568,680	+				+0.9
2,568,680	+				+0.5
2,568,681	-				+1.4
2,568,681	-				-1.3
2,568,681	-				+0.4
2,568,723	-				+1.9
2,568,729	+				-0.9
2,568,729	+				-0.4
2,568,730	-				+0.3
2,568,887	+				+1.3
2,568,902	-				-1.3
2,568,949	+				-0.5
2,568,953	-				+1.3
2,568,953	-				+0.5
2,568,964	+				-0.3
2,568,965	-				-2.3
2,568,980	-				-0.9
2,569,080	+				+1.7
2,569,147	-				+0.5
2,569,196	+		LU632_RS13465	0.47	+1.0
2,569,211	+		LU632_RS13465	0.61	-0.3
2,569,211	+		LU632_RS13465	0.61	+0.1
2,569,211	+		LU632_RS13465	0.61	+0.1
2,569,283	-				+0.4
2,569,296	-				-1.4
2,569,802	+		LU632_RS13470	0.72	-1.1
2,569,803	-		LU632_RS13470	0.73	+0.1
2,569,804	+		LU632_RS13470	0.73	+1.3
2,569,805	-		LU632_RS13470	0.73	+1.3
2,569,805	-		LU632_RS13470	0.73	+1.6
2,569,847	+		LU632_RS13470	0.78	+0.5
2,569,847	+		LU632_RS13470	0.78	+2.1
2,569,885	-		LU632_RS13470	0.83	+2.3
2,570,060	-		LU632_RS13475	0.13	-0.0
2,570,060	-		LU632_RS13475	0.13	-1.3
2,570,328	-		LU632_RS13475	0.78	-0.9
2,570,419	+				+0.7
2,570,446	+				-1.0
2,570,450	+				-0.2
2,570,451	-				-0.1
2,570,453	-				-0.7
2,570,476	-				+2.0
2,570,565	-				-1.3
2,570,650	+				+1.6
2,570,653	+				-0.3
2,570,654	-				-0.6
2,570,679	+				-1.5
2,570,734	+				+1.0
2,570,734	+				+1.6
2,570,735	-				-0.2
2,570,863	-				+0.7