Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13460

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
2,566,675	-		LU632_RS13450	0.75	-1.0
2,566,675	-		LU632_RS13450	0.75	+1.0
2,566,707	+		LU632_RS13450	0.86	-1.3
2,566,707	+		LU632_RS13450	0.86	+0.3
2,566,708	-		LU632_RS13450	0.86	-0.3
2,566,720	+				-1.0
2,566,720	+				-2.3
2,566,721	-				+2.7
2,566,721	-				-1.6
2,566,781	+				+0.5
2,566,781	+				-0.4
2,566,782	-				-1.0
2,566,782	-				-0.2
2,566,884	+				-1.0
2,566,884	+				-0.0
2,566,885	-				-2.0
2,566,885	-				-0.1
2,566,885	-				-0.3
2,566,885	-				-0.3
2,566,885	-				-0.4
2,567,005	-	cmoA	LU632_RS13455	0.16	+0.3
2,567,005	-	cmoA	LU632_RS13455	0.16	+2.3
2,567,010	+	cmoA	LU632_RS13455	0.17	+0.5
2,567,065	+	cmoA	LU632_RS13455	0.24	-0.4
2,567,072	+	cmoA	LU632_RS13455	0.25	-1.3
2,567,331	+	cmoA	LU632_RS13455	0.60	+0.3
2,567,332	-	cmoA	LU632_RS13455	0.60	-2.8
2,567,332	-	cmoA	LU632_RS13455	0.60	+1.3
2,567,554	-				-0.5
2,567,643	+				-0.5
2,567,725	+	cmoB	LU632_RS13460	0.11	+0.3
2,567,726	-	cmoB	LU632_RS13460	0.11	-0.5
2,567,907	+	cmoB	LU632_RS13460	0.29	+3.4
2,567,907	+	cmoB	LU632_RS13460	0.29	+0.3
2,567,918	+	cmoB	LU632_RS13460	0.31	-0.3
2,567,918	+	cmoB	LU632_RS13460	0.31	-0.7
2,567,919	-	cmoB	LU632_RS13460	0.31	-1.0
2,567,919	-	cmoB	LU632_RS13460	0.31	+1.6
2,568,026	+	cmoB	LU632_RS13460	0.42	-0.7
2,568,026	+	cmoB	LU632_RS13460	0.42	-1.9
2,568,026	+	cmoB	LU632_RS13460	0.42	+0.7
2,568,026	+	cmoB	LU632_RS13460	0.42	-0.7
2,568,027	-	cmoB	LU632_RS13460	0.42	+0.3
2,568,027	-	cmoB	LU632_RS13460	0.42	+1.0
2,568,027	-	cmoB	LU632_RS13460	0.42	+0.3
2,568,027	-	cmoB	LU632_RS13460	0.42	-0.3
2,568,118	+	cmoB	LU632_RS13460	0.51	+3.1
2,568,180	-	cmoB	LU632_RS13460	0.58	+0.7
2,568,185	-	cmoB	LU632_RS13460	0.58	+0.3
2,568,185	-	cmoB	LU632_RS13460	0.58	-2.4
2,568,248	-	cmoB	LU632_RS13460	0.65	+0.6
2,568,345	+	cmoB	LU632_RS13460	0.75	-1.3
2,568,359	+	cmoB	LU632_RS13460	0.76	-1.0
2,568,360	-	cmoB	LU632_RS13460	0.76	+0.5
2,568,392	-	cmoB	LU632_RS13460	0.79	+0.3
2,568,657	+				-1.0
2,568,666	+				+0.5
2,568,680	+				+0.9
2,568,680	+				+0.5
2,568,681	-				+1.4
2,568,681	-				-1.3
2,568,681	-				+0.4
2,568,723	-				+1.9
2,568,729	+				-0.9
2,568,729	+				-0.4
2,568,730	-				+0.3
2,568,887	+				+1.3
2,568,902	-				-1.3
2,568,949	+				-0.5
2,568,953	-				+1.3
2,568,953	-				+0.5
2,568,964	+				-0.3
2,568,965	-				-2.3
2,568,980	-				-0.9
2,569,080	+				+1.7
2,569,147	-				+0.5
2,569,196	+		LU632_RS13465	0.47	+1.0
2,569,211	+		LU632_RS13465	0.61	-0.3
2,569,211	+		LU632_RS13465	0.61	+0.1
2,569,211	+		LU632_RS13465	0.61	+0.1
2,569,283	-				+0.4
2,569,296	-				-1.4