Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13380

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
2,550,786	+	pyk	LU632_RS13370	0.74	+0.4
2,550,830	+	pyk	LU632_RS13370	0.77	-0.6
2,550,865	+	pyk	LU632_RS13370	0.79	-0.1
2,550,865	+	pyk	LU632_RS13370	0.79	-0.3
2,550,866	-	pyk	LU632_RS13370	0.79	+4.6
2,550,866	-	pyk	LU632_RS13370	0.79	-2.3
2,550,913	+	pyk	LU632_RS13370	0.83	+0.1
2,550,914	-	pyk	LU632_RS13370	0.83	-1.0
2,550,914	-	pyk	LU632_RS13370	0.83	+0.7
2,551,046	-				-0.7
2,551,160	+				+1.2
2,551,160	+				+0.8
2,551,160	+				-2.3
2,551,167	+				-0.2
2,551,168	-				-1.6
2,551,187	-				+1.3
2,551,355	+		LU632_RS13375	0.26	-2.4
2,551,355	+		LU632_RS13375	0.26	-2.4
2,551,663	+				-0.2
2,551,663	+				-1.0
2,551,663	+				+0.9
2,551,663	+				-1.1
2,551,664	-				+0.3
2,551,664	-				-0.2
2,551,664	-				+2.1
2,551,705	+				-1.2
2,551,809	+				+0.6
2,551,809	+				-2.0
2,551,810	-				-0.5
2,551,810	-				+2.1
2,552,062	+		LU632_RS13380	0.27	-0.5
2,552,291	+		LU632_RS13380	0.46	+0.6
2,552,327	+		LU632_RS13380	0.49	+0.9
2,552,490	+		LU632_RS13380	0.62	+0.4
2,552,490	+		LU632_RS13380	0.62	+0.3
2,552,491	-		LU632_RS13380	0.62	-0.6
2,552,608	+		LU632_RS13380	0.71	-1.9
2,552,658	+		LU632_RS13380	0.75	+0.4
2,552,658	+		LU632_RS13380	0.75	-2.3
2,552,780	-		LU632_RS13380	0.85	-0.4
2,552,793	-		LU632_RS13380	0.86	+1.0
2,553,008	-				-0.7
2,553,132	+				+1.3