Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13180

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
2,513,971	-	pabB	LU632_RS13175	0.30	+1.0
2,513,972	+	pabB	LU632_RS13175	0.30	+2.8
2,513,972	+	pabB	LU632_RS13175	0.30	-0.8
2,513,972	+	pabB	LU632_RS13175	0.30	+1.5
2,513,972	+	pabB	LU632_RS13175	0.30	-2.5
2,513,972	+	pabB	LU632_RS13175	0.30	+4.5
2,513,973	-	pabB	LU632_RS13175	0.30	+0.4
2,514,050	-	pabB	LU632_RS13175	0.35	+1.3
2,514,137	+	pabB	LU632_RS13175	0.42	+0.4
2,514,137	+	pabB	LU632_RS13175	0.42	-1.1
2,514,138	-	pabB	LU632_RS13175	0.42	-0.5
2,514,604	+	pabB	LU632_RS13175	0.76	-0.8
2,514,746	+	pabB	LU632_RS13175	0.86	+0.6
2,514,779	-	pabB	LU632_RS13175	0.89	-0.3
2,514,781	+	pabB	LU632_RS13175	0.89	+0.0
2,514,781	+	pabB	LU632_RS13175	0.89	+0.2
2,514,782	-	pabB	LU632_RS13175	0.89	-0.7
2,514,785	-	pabB	LU632_RS13175	0.89	-0.0
2,514,957	-				-0.4
2,515,040	+		LU632_RS13180	0.20	+4.8
2,515,212	+		LU632_RS13180	0.50	-0.7
2,515,212	+		LU632_RS13180	0.50	+1.3
2,515,212	+		LU632_RS13180	0.50	-1.0
2,515,589	+				+0.1
2,515,592	+				+0.8
2,515,592	+				-0.7
2,515,593	-				-0.3
2,515,593	-				+0.8
2,515,611	+				-2.3
2,515,612	-				-0.3
2,515,618	+				+0.0
2,515,619	-				-0.5
2,515,624	-				-1.4
2,515,636	-				-1.7
2,515,671	+				+0.5
2,515,679	-				+0.3
2,515,679	-				-1.4
2,515,734	-				+0.9
2,515,811	-				-1.7
2,515,811	-				-1.5
2,515,813	+				+1.3
2,515,814	-				+1.3
2,515,816	+				-0.5
2,515,840	-				-0.3
2,515,869	-				-0.8
2,515,916	+				+0.4
2,515,967	+				+0.9
2,516,033	+	sdaA	LU632_RS13185	0.12	+2.6
2,516,072	-	sdaA	LU632_RS13185	0.15	+0.6
2,516,072	-	sdaA	LU632_RS13185	0.15	-0.6
2,516,289	+	sdaA	LU632_RS13185	0.31	-2.0
2,516,497	+	sdaA	LU632_RS13185	0.46	+0.7