Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12950

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
2,467,896	+	purU	LU632_RS12940	0.49	-0.2
2,467,939	+	purU	LU632_RS12940	0.54	-0.6
2,467,973	+	purU	LU632_RS12940	0.58	-0.7
2,467,974	-	purU	LU632_RS12940	0.58	-1.4
2,467,991	+	purU	LU632_RS12940	0.60	-2.4
2,467,991	+	purU	LU632_RS12940	0.60	-2.8
2,467,991	+	purU	LU632_RS12940	0.60	-0.7
2,467,991	+	purU	LU632_RS12940	0.60	-2.3
2,467,992	-	purU	LU632_RS12940	0.60	-2.7
2,467,994	-	purU	LU632_RS12940	0.60	-0.9
2,467,994	-	purU	LU632_RS12940	0.60	-3.1
2,468,020	-	purU	LU632_RS12940	0.63	-0.3
2,468,090	+	purU	LU632_RS12940	0.72	-1.2
2,468,102	+	purU	LU632_RS12940	0.73	-2.4
2,468,103	-	purU	LU632_RS12940	0.73	-0.2
2,468,103	-	purU	LU632_RS12940	0.73	-0.0
2,468,141	+	purU	LU632_RS12940	0.78	-1.6
2,468,176	+	purU	LU632_RS12940	0.82	-0.1
2,468,203	+	purU	LU632_RS12940	0.85	+0.1
2,468,204	-	purU	LU632_RS12940	0.85	+1.8
2,468,204	-	purU	LU632_RS12940	0.85	-0.3
2,468,207	+	purU	LU632_RS12940	0.86	-0.7
2,468,207	+	purU	LU632_RS12940	0.86	-1.5
2,468,208	-	purU	LU632_RS12940	0.86	+1.5
2,468,221	+	purU	LU632_RS12940	0.87	+2.2
2,468,221	+	purU	LU632_RS12940	0.87	-0.5
2,468,222	-	purU	LU632_RS12940	0.87	-1.1
2,468,303	+				-0.9
2,468,327	+				-0.7
2,468,414	-				+0.7
2,468,651	+				+0.9
2,468,651	+				-1.0
2,468,651	+				-2.1
2,468,724	+				+0.3
2,468,725	-				-0.2
2,468,749	+				+0.3
2,468,749	+				+0.6
2,468,749	+				+2.4
2,468,752	-				+2.8
2,468,769	+				+0.9
2,468,769	+				-0.3
2,468,975	+	xthA	LU632_RS12950	0.15	-0.9
2,468,975	+	xthA	LU632_RS12950	0.15	-1.9
2,468,975	+	xthA	LU632_RS12950	0.15	+1.3
2,468,975	+	xthA	LU632_RS12950	0.15	+0.4
2,468,975	+	xthA	LU632_RS12950	0.15	+0.1
2,468,975	+	xthA	LU632_RS12950	0.15	-1.1
2,468,976	-	xthA	LU632_RS12950	0.15	+1.3
2,468,976	-	xthA	LU632_RS12950	0.15	-0.2
2,468,976	-	xthA	LU632_RS12950	0.15	-0.1
2,468,976	-	xthA	LU632_RS12950	0.15	-0.6
2,469,021	+	xthA	LU632_RS12950	0.20	+0.4
2,469,022	-	xthA	LU632_RS12950	0.21	-1.3
2,469,042	+	xthA	LU632_RS12950	0.23	-0.0
2,469,181	-	xthA	LU632_RS12950	0.40	+0.1
2,469,259	-	xthA	LU632_RS12950	0.50	-1.2
2,469,292	+	xthA	LU632_RS12950	0.54	-0.2
2,469,293	-	xthA	LU632_RS12950	0.54	-0.5
2,469,296	+	xthA	LU632_RS12950	0.55	-0.9
2,469,296	+	xthA	LU632_RS12950	0.55	+0.6
2,469,314	+	xthA	LU632_RS12950	0.57	+0.0
2,469,315	-	xthA	LU632_RS12950	0.57	+1.6
2,469,315	-	xthA	LU632_RS12950	0.57	-0.9
2,469,446	+	xthA	LU632_RS12950	0.73	-2.1
2,469,446	+	xthA	LU632_RS12950	0.73	-1.1
2,469,447	-	xthA	LU632_RS12950	0.73	+0.1
2,469,506	+	xthA	LU632_RS12950	0.81	-1.3
2,469,506	+	xthA	LU632_RS12950	0.81	+1.0
2,469,597	+				-0.7
2,469,598	-				-1.8
2,469,682	-				-0.7
2,469,699	-				+1.3
2,469,738	-		LU632_RS12955	0.12	-0.2
2,469,763	+		LU632_RS12955	0.19	+1.3
2,469,769	+		LU632_RS12955	0.21	+2.7
2,469,769	+		LU632_RS12955	0.21	+1.3
2,469,770	-		LU632_RS12955	0.21	-0.0
2,469,801	+		LU632_RS12955	0.30	-1.1
2,469,802	-		LU632_RS12955	0.31	+1.0
2,469,804	-		LU632_RS12955	0.31	+0.6
2,469,819	-		LU632_RS12955	0.36	-0.7
2,469,888	+		LU632_RS12955	0.56	+0.3
2,469,889	-		LU632_RS12955	0.56	-1.2
2,469,889	-		LU632_RS12955	0.56	+2.2
2,469,889	-		LU632_RS12955	0.56	-0.1
2,469,889	-		LU632_RS12955	0.56	+0.4
2,469,892	+		LU632_RS12955	0.57	-0.8
2,469,892	+		LU632_RS12955	0.57	+0.7
2,469,892	+		LU632_RS12955	0.57	-0.6
2,469,892	+		LU632_RS12955	0.57	-1.1
2,469,892	+		LU632_RS12955	0.57	+2.0
2,469,893	-		LU632_RS12955	0.57	+0.9
2,469,893	-		LU632_RS12955	0.57	+0.5
2,469,917	+		LU632_RS12955	0.64	+2.3
2,469,939	+		LU632_RS12955	0.71	+1.3
2,469,966	-		LU632_RS12955	0.79	-1.1
2,470,024	-				+0.3
2,470,029	+				-0.2
2,470,039	+				-1.9
2,470,040	-				-0.6
2,470,064	+				+1.3
2,470,065	-				-1.0
2,470,065	-				+0.3
2,470,175	+				-0.4
2,470,187	-				-0.2
2,470,190	+				-0.7
2,470,190	+				+0.2
2,470,307	+		LU632_RS12960	0.14	+1.0
2,470,307	+		LU632_RS12960	0.14	+0.3
2,470,308	-		LU632_RS12960	0.14	+1.3
2,470,310	-		LU632_RS12960	0.14	-0.8
2,470,322	+		LU632_RS12960	0.15	-0.6
2,470,443	-		LU632_RS12960	0.21	+1.4
2,470,458	+		LU632_RS12960	0.22	-1.0
2,470,459	-		LU632_RS12960	0.22	+0.3
2,470,461	+		LU632_RS12960	0.22	+0.7