Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12345

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
2,347,901	+				-1.6
2,347,901	+				+0.4
2,347,902	-				+0.2
2,347,939	+				+0.9
2,347,987	-				-0.3
2,347,988	+				-1.4
2,347,988	+				-0.2
2,347,989	-				+0.3
2,348,057	+				-1.1
2,348,064	-				-0.6
2,348,119	-				-1.9
2,348,178	+				+0.3
2,348,178	+				-0.8
2,348,178	+				-1.1
2,348,179	-				-0.5
2,348,179	-				-1.3
2,348,179	-				+0.1
2,348,179	-				+0.6
2,348,179	-				-0.5
2,348,183	-				+1.0
2,348,194	+				+2.4
2,348,194	+				+1.1
2,348,195	-				-0.1
2,348,286	+				-0.3
2,348,471	+				-0.0
2,348,477	+				-1.0
2,348,477	+				+1.3
2,348,478	-				-1.4
2,348,525	+				-0.3
2,348,578	-				+1.4
2,348,612	+				+0.9
2,348,657	+				-0.3
2,348,658	-				-0.6
2,348,658	-				+1.1
2,348,670	+				-0.1
2,348,670	+				+1.1
2,348,670	+				-0.7
2,348,787	-				+0.4
2,348,805	+				-0.6
2,348,823	+				-0.7
2,348,823	+				+0.7
2,348,824	-				+0.9
2,348,824	-				+0.5
2,348,910	+		LU632_RS12345	0.54	+0.2
2,348,910	+		LU632_RS12345	0.54	-0.5
2,348,911	-		LU632_RS12345	0.54	-0.5
2,348,911	-		LU632_RS12345	0.54	-0.1
2,348,911	-		LU632_RS12345	0.54	+0.2
2,348,914	+		LU632_RS12345	0.56	-0.1
2,348,914	+		LU632_RS12345	0.56	-0.3
2,348,914	+		LU632_RS12345	0.56	-1.9
2,348,915	-		LU632_RS12345	0.56	-1.6
2,348,915	-		LU632_RS12345	0.56	-0.3
2,349,038	-				-1.1
2,349,093	+				-2.3
2,349,093	+				-0.3
2,349,093	+				+0.7
2,349,100	+				+1.0
2,349,101	-				-0.8
2,349,101	-				+3.5
2,349,101	-				-0.2
2,349,101	-				+0.2
2,349,136	+				-1.9
2,349,221	+				-1.1
2,349,228	-				+0.3
2,349,228	-				+1.2
2,349,335	+		LU632_RS12350	0.25	-1.3
2,349,484	+		LU632_RS12350	0.77	+0.4
2,349,540	+				+0.7