Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11995

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
2,276,422	+				-0.2
2,276,490	+				-1.3
2,276,491	-				+1.2
2,276,492	+				-0.1
2,276,573	+				+1.2
2,276,574	-				+0.3
2,276,574	-				-0.3
2,276,578	-				+0.6
2,276,581	-				-1.0
2,276,593	+				-1.7
2,276,699	-				-0.5
2,277,095	+	dbpA	LU632_RS11995	0.31	+0.5
2,277,095	+	dbpA	LU632_RS11995	0.31	+0.1
2,277,096	-	dbpA	LU632_RS11995	0.31	+0.5
2,277,260	-	dbpA	LU632_RS11995	0.43	+1.8
2,277,280	-	dbpA	LU632_RS11995	0.45	+0.4
2,277,280	-	dbpA	LU632_RS11995	0.45	+0.7
2,277,291	+	dbpA	LU632_RS11995	0.46	+0.0
2,277,346	+	dbpA	LU632_RS11995	0.50	-0.3
2,277,403	+	dbpA	LU632_RS11995	0.54	-1.1
2,277,469	+	dbpA	LU632_RS11995	0.58	+0.7
2,277,524	+	dbpA	LU632_RS11995	0.62	+0.8
2,277,525	-	dbpA	LU632_RS11995	0.63	-0.5
2,277,525	-	dbpA	LU632_RS11995	0.63	+0.1
2,277,669	+	dbpA	LU632_RS11995	0.73	-1.1
2,277,670	-	dbpA	LU632_RS11995	0.73	+1.2
2,277,846	+	dbpA	LU632_RS11995	0.86	-1.3
2,277,849	+	dbpA	LU632_RS11995	0.86	+0.5
2,277,850	-	dbpA	LU632_RS11995	0.86	-0.1
2,277,971	+				-1.6
2,278,098	+				+0.9
2,278,099	-				-0.5
2,278,099	-				-1.3
2,278,101	+				-1.1
2,278,119	+				+0.7
2,278,120	-				-1.0
2,278,120	-				+1.5
2,278,146	-				-1.0
2,278,157	+				-0.0
2,278,157	+				+0.9
2,278,239	+				-0.4
2,278,315	+				-0.7
2,278,316	-				-1.6
2,278,316	-				+0.3
2,278,316	-				+0.7
2,278,316	-				+1.8
2,278,378	+				-2.7
2,278,379	-				-1.9
2,278,380	+				-0.9
2,278,381	-				+0.2
2,278,381	-				-0.8
2,278,384	+				+1.3
2,278,384	+				-0.8
2,278,385	-				-0.5
2,278,409	+				+1.8
2,278,443	+				+0.0
2,278,443	+				-0.8
2,278,444	-				-1.1
2,278,538	-				+1.5
2,278,560	+				-0.6
2,278,920	+		LU632_RS12000	0.35	+0.2
2,278,920	+		LU632_RS12000	0.35	-0.3
2,278,920	+		LU632_RS12000	0.35	+1.2
2,278,921	-		LU632_RS12000	0.35	-1.6
2,278,978	-		LU632_RS12000	0.42	-2.0
2,279,025	+		LU632_RS12000	0.47	-0.3
2,279,025	+		LU632_RS12000	0.47	+2.2