Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11190

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
2,139,783	-		LU632_RS11185	0.11	-0.3
2,139,822	+		LU632_RS11185	0.16	+1.4
2,139,826	+		LU632_RS11185	0.16	-0.5
2,139,870	-		LU632_RS11185	0.21	-1.1
2,139,870	-		LU632_RS11185	0.21	-0.8
2,139,964	+		LU632_RS11185	0.31	+0.3
2,139,965	-		LU632_RS11185	0.31	-0.5
2,139,984	+		LU632_RS11185	0.34	-1.0
2,139,984	+		LU632_RS11185	0.34	+2.3
2,139,985	-		LU632_RS11185	0.34	-0.5
2,140,008	+		LU632_RS11185	0.36	+0.6
2,140,008	+		LU632_RS11185	0.36	-0.2
2,140,041	+		LU632_RS11185	0.40	+0.3
2,140,047	+		LU632_RS11185	0.41	-0.5
2,140,047	+		LU632_RS11185	0.41	-0.7
2,140,047	+		LU632_RS11185	0.41	-0.7
2,140,048	-		LU632_RS11185	0.41	-0.7
2,140,048	-		LU632_RS11185	0.41	-0.7
2,140,048	-		LU632_RS11185	0.41	-0.1
2,140,132	+		LU632_RS11185	0.50	-1.0
2,140,279	+		LU632_RS11185	0.66	+0.6
2,140,297	+		LU632_RS11185	0.68	-2.7
2,140,421	+		LU632_RS11185	0.82	+2.1
2,140,422	-		LU632_RS11185	0.82	+0.3
2,140,538	+				+0.3
2,140,579	+				-0.2
2,140,579	+				-0.1
2,140,580	-				-0.9
2,140,580	-				+0.9
2,140,580	-				+4.2
2,140,583	+				-0.3
2,140,596	+				-0.4
2,140,596	+				-0.3
2,140,596	+				+1.1
2,140,597	-				-1.7
2,140,668	+				-0.1
2,140,669	-				+0.5
2,140,718	+				-1.2
2,140,718	+				-0.3
2,140,719	-				-0.4
2,140,778	+				-2.1
2,140,779	-				-0.3
2,140,806	-				-0.7
2,140,808	+				-1.3
2,140,808	+				-0.8
2,140,809	-				+1.0
2,140,888	+	purR	LU632_RS11190	0.17	-1.1
2,140,907	+	purR	LU632_RS11190	0.19	-1.9
2,140,908	-	purR	LU632_RS11190	0.19	+1.3
2,140,908	-	purR	LU632_RS11190	0.19	-1.1
2,141,108	+	purR	LU632_RS11190	0.39	+0.2
2,141,182	-	purR	LU632_RS11190	0.46	-0.4
2,141,218	+	purR	LU632_RS11190	0.50	+0.7
2,141,218	+	purR	LU632_RS11190	0.50	-0.2
2,141,342	+	purR	LU632_RS11190	0.62	+1.3
2,141,342	+	purR	LU632_RS11190	0.62	-0.7
2,141,343	-	purR	LU632_RS11190	0.62	-0.2
2,141,343	-	purR	LU632_RS11190	0.62	+1.7
2,141,343	-	purR	LU632_RS11190	0.62	-1.1
2,141,343	-	purR	LU632_RS11190	0.62	-0.5
2,141,561	+	purR	LU632_RS11190	0.83	+1.8
2,141,604	+	purR	LU632_RS11190	0.87	-0.3
2,141,605	-	purR	LU632_RS11190	0.87	-0.1
2,141,721	+				+0.8
2,141,939	+				+2.3
2,142,050	+				+2.1
2,142,060	-				+1.9
2,142,084	+				+1.8
2,142,092	-				+0.7
2,142,164	+				-0.1
2,142,181	+				+1.0
2,142,182	-				-0.5
2,142,197	-				+0.1
2,142,225	-		LU632_RS11195	0.11	-0.0
2,142,225	-		LU632_RS11195	0.11	-0.1
2,142,272	-		LU632_RS11195	0.17	+0.2
2,142,279	+		LU632_RS11195	0.17	-0.3
2,142,280	-		LU632_RS11195	0.18	-0.4
2,142,280	-		LU632_RS11195	0.18	+0.4
2,142,307	-		LU632_RS11195	0.21	+1.0
2,142,377	-		LU632_RS11195	0.30	-0.6
2,142,404	+		LU632_RS11195	0.33	-0.6
2,142,424	+		LU632_RS11195	0.35	-0.8
2,142,424	+		LU632_RS11195	0.35	+0.7
2,142,425	-		LU632_RS11195	0.36	-2.5
2,142,552	-		LU632_RS11195	0.51	+0.2
2,142,612	-		LU632_RS11195	0.59	-0.6
2,142,612	-		LU632_RS11195	0.59	+0.7
2,142,649	+		LU632_RS11195	0.63	+0.4
2,142,650	-		LU632_RS11195	0.63	+0.8
2,142,652	-		LU632_RS11195	0.64	+0.8