Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10880

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
2,077,175	+				+1.3
2,077,175	+				-0.7
2,077,176	-				-2.2
2,077,178	+				-0.3
2,077,182	-				+0.2
2,077,252	+				+0.9
2,077,268	+				-0.5
2,077,269	-				-1.3
2,077,310	+				+0.1
2,077,314	+				+0.5
2,077,347	+				+0.3
2,077,348	-				+0.2
2,077,379	-				+0.2
2,077,432	+				-2.8
2,077,432	+				-0.3
2,077,432	+				-1.9
2,077,466	+		LU632_RS10880	0.11	-2.1
2,077,487	+		LU632_RS10880	0.14	+0.1
2,077,487	+		LU632_RS10880	0.14	-0.1
2,077,488	-		LU632_RS10880	0.14	+1.3
2,077,488	-		LU632_RS10880	0.14	-0.3
2,077,488	-		LU632_RS10880	0.14	-1.5
2,077,608	+		LU632_RS10880	0.30	-0.6
2,077,608	+		LU632_RS10880	0.30	-0.5
2,077,609	-		LU632_RS10880	0.30	-1.1
2,077,651	+		LU632_RS10880	0.36	-0.6
2,077,652	-		LU632_RS10880	0.36	-0.7
2,077,668	+		LU632_RS10880	0.38	+0.5
2,077,759	-		LU632_RS10880	0.50	-1.3
2,077,802	-		LU632_RS10880	0.56	+2.4
2,077,825	+		LU632_RS10880	0.59	-2.4
2,077,849	+		LU632_RS10880	0.62	+1.3
2,078,037	-		LU632_RS10880	0.87	+0.3
2,078,046	+		LU632_RS10880	0.88	-2.6
2,078,125	-				-2.4
2,078,130	-				-0.3
2,078,134	-				-1.5
2,078,145	-				-0.2
2,078,149	-				-1.5
2,078,161	-				-0.5
2,078,164	+				+1.5
2,078,165	-				-1.1
2,078,165	-				+0.7
2,078,165	-				+0.8
2,078,255	+				-1.2
2,078,256	-				-0.7
2,078,257	+				-0.9
2,078,307	+				-1.1
2,078,310	+				-1.8
2,078,316	+				+0.1
2,078,316	+				-1.1
2,078,316	+				+0.9
2,078,320	-				+1.2
2,078,324	+				+0.6
2,078,366	-				+2.7
2,078,419	-				+0.4
2,078,419	-				+1.4
2,078,464	-				-1.4
2,078,899	+		LU632_RS10885	0.58	-0.6
2,078,999	+		LU632_RS10885	0.71	-0.1
2,078,999	+		LU632_RS10885	0.71	-0.0