Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10695

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
2,039,045	+				-0.1
2,039,218	+		LU632_RS10685	0.68	-1.2
2,039,266	+		LU632_RS10685	0.87	+1.2
2,039,352	-				+0.2
2,039,352	-				+0.4
2,039,353	+				-0.5
2,039,353	+				-1.1
2,039,354	-				+0.0
2,039,354	-				-1.4
2,039,428	+		LU632_RS10690	0.44	+1.6
2,039,524	-		LU632_RS10690	0.88	+0.7
2,039,527	+		LU632_RS10690	0.89	+0.9
2,039,527	+		LU632_RS10690	0.89	+0.7
2,039,554	+				-1.7
2,039,559	-				-0.7
2,039,559	-				-0.3
2,039,691	-				+0.3
2,039,794	-				-0.5
2,039,874	+				+0.6
2,039,874	+				+1.2
2,039,878	+				+0.1
2,039,878	+				+0.1
2,039,878	+				+0.1
2,039,878	+				+6.7
2,039,882	-				+0.8
2,040,965	-				+1.5
2,040,965	-				-1.6
2,040,987	+				-0.7
2,041,100	-				+1.6
2,041,110	-				-0.3