Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10460

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
2,000,522	-		LU632_RS10455	0.73	+1.0
2,000,582	+		LU632_RS10455	0.76	+0.7
2,000,646	+		LU632_RS10455	0.78	-1.0
2,000,646	+		LU632_RS10455	0.78	+1.2
2,000,647	-		LU632_RS10455	0.78	-0.4
2,000,647	-		LU632_RS10455	0.78	-0.9
2,001,047	+				-0.5
2,001,047	+				-1.8
2,001,047	+				-0.3
2,001,047	+				-0.1
2,001,048	-				+1.3
2,001,048	-				-0.7
2,001,048	-				+0.6
2,001,048	-				+0.1
2,001,048	-				-0.3
2,001,048	-				-0.5
2,001,106	+				-0.1
2,001,107	-				+0.7
2,001,216	-				+0.8
2,001,926	+		LU632_RS10465	0.28	-2.5
2,001,927	-		LU632_RS10465	0.28	+0.1
2,002,051	-		LU632_RS10465	0.56	-0.9
2,002,111	+		LU632_RS10465	0.70	-0.8
2,002,140	-		LU632_RS10465	0.77	+0.3
2,002,588	+				-0.4