Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10260

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
1,958,441	-				+0.1
1,958,441	-				-0.4
1,958,466	-				+0.0
1,958,492	-				-0.3
1,958,492	-				+0.1
1,958,494	+				-0.3
1,958,495	-				-0.7
1,958,495	-				-1.7
1,958,495	-				+0.2
1,958,553	+				-0.1
1,958,567	-				-0.2
1,958,572	-				+1.3
1,958,582	+				+1.6
1,958,582	+				-0.9
1,958,586	+				-0.7
1,958,587	-				-0.7
1,958,587	-				-0.3
1,958,707	+				+0.7
1,958,733	+				+0.1
1,958,803	+				-0.7
1,958,804	-				+0.3
1,958,804	-				+0.3
1,958,834	+				-0.1
1,958,834	+				-0.7
1,958,941	-		LU632_RS10250	0.36	-1.9
1,959,160	-		LU632_RS10255	0.33	-1.7
1,959,380	+				+2.8
1,959,409	-				-0.7
1,959,438	+		LU632_RS10260	0.13	+0.9
1,959,594	+				+0.9
1,959,617	-				+3.0
1,959,622	+				-0.4
1,959,623	-				+0.2
1,959,716	-	mdoC	LU632_RS10265	0.12	-0.3
1,959,761	+	mdoC	LU632_RS10265	0.16	-0.1
1,959,762	-	mdoC	LU632_RS10265	0.16	-0.7
1,959,766	-	mdoC	LU632_RS10265	0.17	+1.2
1,959,987	+	mdoC	LU632_RS10265	0.36	-2.6
1,959,987	+	mdoC	LU632_RS10265	0.36	-1.0
1,959,988	-	mdoC	LU632_RS10265	0.36	-0.4
1,960,010	+	mdoC	LU632_RS10265	0.38	-0.9
1,960,054	+	mdoC	LU632_RS10265	0.42	-0.7
1,960,074	-	mdoC	LU632_RS10265	0.44	+0.3
1,960,074	-	mdoC	LU632_RS10265	0.44	+0.5
1,960,074	-	mdoC	LU632_RS10265	0.44	-2.9
1,960,108	-	mdoC	LU632_RS10265	0.47	+1.2
1,960,111	+	mdoC	LU632_RS10265	0.47	-0.3
1,960,111	+	mdoC	LU632_RS10265	0.47	+0.3
1,960,151	+	mdoC	LU632_RS10265	0.51	+0.1
1,960,178	-	mdoC	LU632_RS10265	0.53	+0.5
1,960,199	+	mdoC	LU632_RS10265	0.55	+1.4
1,960,199	+	mdoC	LU632_RS10265	0.55	-0.7
1,960,308	+	mdoC	LU632_RS10265	0.65	-1.9
1,960,309	-	mdoC	LU632_RS10265	0.65	-2.0
1,960,318	+	mdoC	LU632_RS10265	0.66	+0.4
1,960,409	-	mdoC	LU632_RS10265	0.74	-2.2
1,960,433	-	mdoC	LU632_RS10265	0.76	-1.7
1,960,447	+	mdoC	LU632_RS10265	0.77	-0.3
1,960,470	+	mdoC	LU632_RS10265	0.79	+0.8
1,960,471	-	mdoC	LU632_RS10265	0.79	-0.7
1,960,471	-	mdoC	LU632_RS10265	0.79	-0.2
1,960,491	-	mdoC	LU632_RS10265	0.81	+1.0
1,960,542	+	mdoC	LU632_RS10265	0.86	+0.7
1,960,558	-	mdoC	LU632_RS10265	0.87	+0.2