Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10230

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
1,954,417	-		LU632_RS10220	0.58	-1.0
1,954,508	-		LU632_RS10220	0.68	+0.9
1,954,509	+		LU632_RS10220	0.68	+2.2
1,954,509	+		LU632_RS10220	0.68	-0.4
1,954,510	-		LU632_RS10220	0.68	+0.3
1,954,561	-		LU632_RS10220	0.73	-0.4
1,954,642	-		LU632_RS10220	0.81	+0.1
1,954,647	+		LU632_RS10220	0.82	+1.4
1,954,648	-		LU632_RS10220	0.82	+1.0
1,954,699	-		LU632_RS10220	0.87	-1.3
1,954,772	+				+0.5
1,955,605	+				-0.2
1,955,727	+		LU632_RS10235	0.12	+0.3
1,955,728	-		LU632_RS10235	0.12	+1.3
1,955,733	+		LU632_RS10235	0.12	-0.3
1,955,734	-		LU632_RS10235	0.12	-0.6
1,955,806	-		LU632_RS10235	0.16	+0.6
1,955,807	+		LU632_RS10235	0.16	-1.0
1,955,807	+		LU632_RS10235	0.16	-0.4
1,955,807	+		LU632_RS10235	0.16	+0.9
1,955,807	+		LU632_RS10235	0.16	-0.5
1,955,808	-		LU632_RS10235	0.16	+0.1
1,955,808	-		LU632_RS10235	0.16	-0.0
1,955,863	-		LU632_RS10235	0.18	-1.3
1,955,863	-		LU632_RS10235	0.18	+1.3
1,955,998	-		LU632_RS10235	0.25	-1.2
1,956,048	+		LU632_RS10235	0.27	+4.1
1,956,048	+		LU632_RS10235	0.27	-0.3
1,956,048	+		LU632_RS10235	0.27	-1.9
1,956,049	-		LU632_RS10235	0.27	+1.5
1,956,049	-		LU632_RS10235	0.27	+0.2
1,956,238	+		LU632_RS10235	0.36	+1.1
1,956,238	+		LU632_RS10235	0.36	+0.3
1,956,239	-		LU632_RS10235	0.36	-0.1
1,956,331	+		LU632_RS10235	0.40	-0.5