Experiment: plant=Squash; plant sample=QP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS10055 and LU632_RS10060 are separated by 78 nucleotides LU632_RS10060 and LU632_RS10065 are separated by 3 nucleotides LU632_RS10065 and LU632_RS10070 are separated by 36 nucleotides LU632_RS10070 and LU632_RS10075 are separated by 196 nucleotides
LU632_RS10055: LU632_RS10055 - IS481 family transposase, at 1,925,440 to 1,926,480
_RS10055
LU632_RS10060: LU632_RS10060 - DUF2057 family protein, at 1,926,559 to 1,926,921
_RS10060
LU632_RS10065: LU632_RS10065 - IS256 family transposase, at 1,926,925 to 1,928,133
_RS10065
LU632_RS10070: LU632_RS10070 - DUF2057 family protein, at 1,928,170 to 1,928,358
_RS10070
LU632_RS10075: LU632_RS10075 - IS1 family transposase, at 1,928,555 to 1,929,252
_RS10075
Position (kb) 1926
1927
1928
1929 Strain fitness (log2 ratio) -1
0
1
2 at 1926.628 kb on - strand, within LU632_RS10060 at 1926.628 kb on - strand, within LU632_RS10060 at 1926.669 kb on + strand, within LU632_RS10060 at 1926.729 kb on + strand, within LU632_RS10060 at 1926.763 kb on - strand, within LU632_RS10060 at 1926.785 kb on - strand, within LU632_RS10060 at 1926.862 kb on - strand, within LU632_RS10060 at 1928.146 kb on + strand at 1928.156 kb on + strand at 1928.224 kb on + strand, within LU632_RS10070 at 1928.225 kb on - strand, within LU632_RS10070 at 1928.228 kb on - strand, within LU632_RS10070 at 1928.263 kb on + strand, within LU632_RS10070 at 1928.268 kb on + strand, within LU632_RS10070 at 1928.329 kb on - strand, within LU632_RS10070 at 1928.555 kb on - strand at 1928.555 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA remove 1,926,628 - LU632_RS10060 0.19 +0.5 1,926,628 - LU632_RS10060 0.19 -0.8 1,926,669 + LU632_RS10060 0.30 +0.2 1,926,729 + LU632_RS10060 0.47 -1.0 1,926,763 - LU632_RS10060 0.56 +0.6 1,926,785 - LU632_RS10060 0.62 -0.4 1,926,862 - LU632_RS10060 0.83 +0.9 1,928,146 + -0.9 1,928,156 + +0.6 1,928,224 + LU632_RS10070 0.29 +2.4 1,928,225 - LU632_RS10070 0.29 +0.4 1,928,228 - LU632_RS10070 0.31 +0.5 1,928,263 + LU632_RS10070 0.49 -1.6 1,928,268 + LU632_RS10070 0.52 +0.3 1,928,329 - LU632_RS10070 0.84 -1.0 1,928,555 - -0.4 1,928,555 - +1.3
Or see this region's nucleotide sequence