Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10050

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
1,921,934	+				-0.8
1,921,937	+				-1.0
1,922,038	+				-0.3
1,922,039	-				+0.2
1,922,047	-				+0.8
1,922,061	+				+1.2
1,922,105	-				+1.9
1,922,126	-		LU632_RS10045	0.10	-0.0
1,922,136	+		LU632_RS10045	0.13	-1.6
1,922,137	-		LU632_RS10045	0.13	-1.3
1,922,141	-		LU632_RS10045	0.14	+1.3
1,922,242	+		LU632_RS10045	0.36	+0.4
1,922,243	-		LU632_RS10045	0.36	-0.7
1,922,243	-		LU632_RS10045	0.36	-1.5
1,922,243	-		LU632_RS10045	0.36	+0.1
1,922,243	-		LU632_RS10045	0.36	+0.8
1,922,285	-		LU632_RS10045	0.46	+2.0
1,922,289	+		LU632_RS10045	0.47	+0.4
1,922,290	-		LU632_RS10045	0.47	-0.3
1,922,367	+		LU632_RS10045	0.64	+0.5
1,922,526	+				-0.4
1,922,553	+				+1.7
1,922,554	-				+2.6
1,922,639	+				+0.9
1,922,639	+				-0.3
1,922,640	-				-0.7
1,922,685	-				-0.3
1,922,707	-				-0.8
1,922,763	+				+0.0
1,922,763	+				+0.6
1,922,763	+				+3.9
1,922,764	-				-0.1
1,922,764	-				-2.0
1,922,765	+				+1.3
1,922,765	+				-1.6
1,922,765	+				+0.1
1,922,765	+				-1.3
1,922,766	-				+0.7
1,922,948	+	helD	LU632_RS10050	0.14	-0.9
1,922,949	-	helD	LU632_RS10050	0.14	-1.5
1,922,951	-	helD	LU632_RS10050	0.14	-1.3
1,922,951	-	helD	LU632_RS10050	0.14	+1.5
1,923,008	+	helD	LU632_RS10050	0.17	-0.8
1,923,087	-	helD	LU632_RS10050	0.21	-1.3
1,923,177	-	helD	LU632_RS10050	0.25	-1.3
1,923,227	+	helD	LU632_RS10050	0.28	+0.3
1,923,248	+	helD	LU632_RS10050	0.29	+1.3
1,923,275	-	helD	LU632_RS10050	0.30	+0.3
1,923,403	-	helD	LU632_RS10050	0.36	-0.3
1,923,577	+	helD	LU632_RS10050	0.45	+0.0
1,923,580	+	helD	LU632_RS10050	0.45	+0.2
1,923,753	+	helD	LU632_RS10050	0.53	+0.3
1,923,753	+	helD	LU632_RS10050	0.53	+0.3
1,923,753	+	helD	LU632_RS10050	0.53	-0.6
1,923,754	-	helD	LU632_RS10050	0.53	-0.7
1,923,754	-	helD	LU632_RS10050	0.53	-1.3
1,923,754	-	helD	LU632_RS10050	0.53	+0.2
1,923,754	-	helD	LU632_RS10050	0.53	-1.3
1,923,754	-	helD	LU632_RS10050	0.53	+0.0
1,923,915	-	helD	LU632_RS10050	0.61	-2.9
1,923,918	-	helD	LU632_RS10050	0.61	-1.0
1,923,957	-	helD	LU632_RS10050	0.63	+0.7
1,923,982	+	helD	LU632_RS10050	0.64	+0.1
1,923,983	-	helD	LU632_RS10050	0.64	-1.1
1,924,004	-	helD	LU632_RS10050	0.65	-0.5
1,924,038	-	helD	LU632_RS10050	0.67	-0.5
1,924,070	+	helD	LU632_RS10050	0.69	-0.7
1,924,070	+	helD	LU632_RS10050	0.69	-1.4
1,924,071	-	helD	LU632_RS10050	0.69	+1.3
1,924,072	+	helD	LU632_RS10050	0.69	-0.7
1,924,072	+	helD	LU632_RS10050	0.69	+0.4
1,924,072	+	helD	LU632_RS10050	0.69	+0.3
1,924,072	+	helD	LU632_RS10050	0.69	-1.5
1,924,073	-	helD	LU632_RS10050	0.69	-1.0
1,924,073	-	helD	LU632_RS10050	0.69	+1.3
1,924,259	+	helD	LU632_RS10050	0.78	+2.5
1,924,384	+	helD	LU632_RS10050	0.84	-0.7
1,924,385	-	helD	LU632_RS10050	0.84	+0.7
1,924,438	+	helD	LU632_RS10050	0.87	+0.3
1,924,439	-	helD	LU632_RS10050	0.87	+1.5
1,924,439	-	helD	LU632_RS10050	0.87	-1.0
1,924,439	-	helD	LU632_RS10050	0.87	-0.5
1,924,596	+				+2.7
1,924,597	-				-3.0
1,924,605	-				+1.5
1,924,627	+				-3.3
1,924,714	+				-0.5
1,924,714	+				+2.2
1,924,736	+				+0.3
1,924,749	-				-0.2
1,924,749	-				+1.3
1,924,770	-				-0.6
1,924,791	+				-1.3
1,924,824	+				+1.3
1,924,824	+				-0.7
1,924,830	+				+0.7
1,924,877	+				+0.1
1,924,925	-				-0.4
1,924,938	+				-0.9
1,925,063	+				-1.5
1,925,064	-				+0.3
1,925,111	+				+0.1
1,925,112	-				+2.0
1,925,112	-				+1.5
1,925,114	+				+2.2
1,925,114	+				-0.8
1,925,114	+				+0.7
1,925,114	+				-0.8
1,925,114	+				+0.4
1,925,114	+				-0.1
1,925,115	-				+1.3
1,925,115	-				-2.8
1,925,128	+				-1.7
1,925,132	+				+0.4
1,925,132	+				+0.8
1,925,133	-				+0.7
1,925,133	-				+1.2
1,925,133	-				-1.7
1,925,133	-				+0.1
1,925,146	+				+0.6
1,925,147	-				-0.5
1,925,234	-				+0.5
1,925,249	+				+0.5
1,925,250	-				-1.5
1,925,252	+				-0.1
1,925,252	+				-2.7
1,925,254	+				+3.9
1,925,254	+				-1.1
1,925,255	-				+1.3
1,925,255	-				-0.7
1,925,255	-				-0.8
1,925,255	-				-1.3
1,925,299	-				-0.3
1,925,301	-				-0.1