Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09990

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
1,910,831	+	pqiC	LU632_RS09985	0.23	+1.0
1,910,838	+	pqiC	LU632_RS09985	0.24	-2.2
1,910,839	-	pqiC	LU632_RS09985	0.24	-0.6
1,910,839	-	pqiC	LU632_RS09985	0.24	+0.4
1,910,895	+	pqiC	LU632_RS09985	0.33	-0.1
1,910,895	+	pqiC	LU632_RS09985	0.33	+0.0
1,910,900	-	pqiC	LU632_RS09985	0.34	-1.0
1,910,916	+	pqiC	LU632_RS09985	0.36	+1.4
1,910,967	+	pqiC	LU632_RS09985	0.44	-0.6
1,911,126	+	pqiC	LU632_RS09985	0.70	-1.2
1,911,127	-	pqiC	LU632_RS09985	0.70	-0.6
1,911,362	-				+2.4
1,911,365	+				+0.1
1,911,366	-				+1.0
1,911,366	-				+1.2
1,911,650	+				-0.5
1,911,651	-				-0.6
1,911,909	-				-0.2
1,912,522	-				+1.1
1,912,539	-				-0.6
1,912,544	-				-1.0
1,912,657	-				+0.1
1,912,661	+				-0.2
1,912,662	-				+0.7
1,912,688	+				+0.4
1,912,747	-				-1.0
1,912,747	-				-1.8
1,912,747	-				-0.2
1,912,749	-		LU632_RS10000	0.10	+1.2
1,912,791	+		LU632_RS10000	0.12	+1.4
1,912,806	+		LU632_RS10000	0.13	-1.8
1,912,807	-		LU632_RS10000	0.13	-0.2
1,912,807	-		LU632_RS10000	0.13	+0.9
1,912,807	-		LU632_RS10000	0.13	+0.3
1,912,807	-		LU632_RS10000	0.13	+0.8
1,912,807	-		LU632_RS10000	0.13	+0.2
1,912,808	+		LU632_RS10000	0.13	+0.8
1,912,851	-		LU632_RS10000	0.16	+4.1
1,912,859	+		LU632_RS10000	0.16	+2.1
1,912,859	+		LU632_RS10000	0.16	-1.6
1,912,860	-		LU632_RS10000	0.16	+0.8
1,912,863	+		LU632_RS10000	0.16	-1.5
1,912,864	-		LU632_RS10000	0.16	+0.1
1,912,864	-		LU632_RS10000	0.16	-1.5
1,912,864	-		LU632_RS10000	0.16	+0.1
1,912,864	-		LU632_RS10000	0.16	-0.2
1,912,864	-		LU632_RS10000	0.16	-1.2
1,912,864	-		LU632_RS10000	0.16	-2.7
1,912,866	-		LU632_RS10000	0.17	+1.6