Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09880

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
1,880,992	+				-1.0
1,885,593	-				-1.1
1,885,596	+				+3.9
1,885,600	+				+0.2
1,885,601	-				+1.0
1,885,646	+				+0.9
1,885,766	-				+0.9
1,885,789	-				+1.5
1,885,790	+				-0.4
1,885,790	+				-1.6
1,885,791	-				+0.4
1,885,791	-				+1.3
1,885,791	-				+0.6
1,885,791	-				+0.1
1,885,791	-				+0.7
1,885,991	+	ldtD	LU632_RS09885	0.15	-0.2
1,886,041	+	ldtD	LU632_RS09885	0.18	+2.2
1,886,119	+	ldtD	LU632_RS09885	0.22	-0.6
1,886,120	-	ldtD	LU632_RS09885	0.22	+0.6
1,886,124	+	ldtD	LU632_RS09885	0.22	-0.2
1,886,124	+	ldtD	LU632_RS09885	0.22	+0.8
1,886,124	+	ldtD	LU632_RS09885	0.22	+2.2
1,886,125	-	ldtD	LU632_RS09885	0.22	+0.8
1,886,125	-	ldtD	LU632_RS09885	0.22	-0.4
1,886,125	-	ldtD	LU632_RS09885	0.22	+0.5
1,886,125	-	ldtD	LU632_RS09885	0.22	+0.0
1,886,126	+	ldtD	LU632_RS09885	0.23	+1.6
1,886,179	-	ldtD	LU632_RS09885	0.26	+1.0