Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09870

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
1,878,016	+	elyC	LU632_RS09860	0.89	-0.5
1,878,017	-	elyC	LU632_RS09860	0.89	+0.2
1,878,062	-				-0.4
1,878,062	-				-0.0
1,878,177	+				+0.6
1,878,177	+				+0.5
1,878,178	-				-0.1
1,878,188	-				+0.8
1,878,276	-				-0.2
1,878,279	+				-1.7
1,878,279	+				-1.1
1,878,279	+				-0.0
1,878,285	-				-1.2
1,878,518	+	cmoM	LU632_RS09865	0.37	+3.3
1,878,631	+	cmoM	LU632_RS09865	0.51	+0.5
1,878,633	+	cmoM	LU632_RS09865	0.51	-0.5
1,878,728	+	cmoM	LU632_RS09865	0.63	-1.0
1,878,728	+	cmoM	LU632_RS09865	0.63	-0.1
1,878,728	+	cmoM	LU632_RS09865	0.63	-1.2
1,878,801	+	cmoM	LU632_RS09865	0.73	-0.1
1,878,867	+	cmoM	LU632_RS09865	0.81	-0.2
1,878,867	+	cmoM	LU632_RS09865	0.81	+0.4
1,878,867	+	cmoM	LU632_RS09865	0.81	-0.0
1,878,867	+	cmoM	LU632_RS09865	0.81	+0.5
1,878,869	+	cmoM	LU632_RS09865	0.81	-1.2
1,878,869	+	cmoM	LU632_RS09865	0.81	+0.8
1,878,869	+	cmoM	LU632_RS09865	0.81	+1.2
1,878,966	+				-1.3
1,878,968	+				-0.6
1,880,992	+				-1.0