Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09290

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
1,752,500	+				-0.3
1,752,542	-				+0.8
1,752,893	+		LU632_RS09285	0.45	+0.4
1,752,894	-		LU632_RS09285	0.45	-1.4
1,752,943	+		LU632_RS09285	0.50	-0.1
1,752,987	+		LU632_RS09285	0.55	+0.1
1,753,119	+		LU632_RS09285	0.69	-0.2
1,753,119	+		LU632_RS09285	0.69	+0.1
1,753,119	+		LU632_RS09285	0.69	+0.4
1,753,120	-		LU632_RS09285	0.69	+0.1
1,753,120	-		LU632_RS09285	0.69	-0.7
1,753,120	-		LU632_RS09285	0.69	-0.3
1,753,120	-		LU632_RS09285	0.69	+0.4
1,753,120	-		LU632_RS09285	0.69	-1.0
1,753,215	+		LU632_RS09285	0.79	-0.9
1,753,383	-				+0.0
1,753,383	-				-1.6
1,753,392	+				+0.1
1,753,393	-				-0.4
1,753,438	+				-1.0
1,753,564	-				-1.7
1,753,564	-				+0.2
1,753,629	+				-0.2
1,753,631	+				+1.2
1,753,632	-				+0.2
1,753,635	+				-0.9
1,753,641	+				+1.5
1,753,642	-				-0.7
1,753,642	-				+1.0
1,753,668	+				-0.0
1,753,722	+				+1.0
1,753,723	-				-1.9
1,753,723	-				-0.3
1,753,986	+		LU632_RS09290	0.14	-0.6
1,753,988	+		LU632_RS09290	0.15	-1.5
1,753,989	-		LU632_RS09290	0.15	+0.4
1,754,013	+		LU632_RS09290	0.15	-0.2
1,754,047	-		LU632_RS09290	0.16	-2.3
1,754,180	-		LU632_RS09290	0.19	-2.6
1,754,193	+		LU632_RS09290	0.20	+0.0
1,754,243	+		LU632_RS09290	0.21	-0.3
1,754,325	+		LU632_RS09290	0.23	-0.6
1,754,326	-		LU632_RS09290	0.23	+0.4
1,754,329	+		LU632_RS09290	0.23	+0.1
1,754,578	-		LU632_RS09290	0.30	+0.0
1,754,589	+		LU632_RS09290	0.30	+0.7
1,754,589	+		LU632_RS09290	0.30	-0.6
1,754,589	+		LU632_RS09290	0.30	-0.5
1,754,589	+		LU632_RS09290	0.30	+2.7
1,754,590	-		LU632_RS09290	0.30	+0.3
1,754,590	-		LU632_RS09290	0.30	+0.1
1,754,591	+		LU632_RS09290	0.30	+1.2
1,754,591	+		LU632_RS09290	0.30	-1.3
1,754,591	+		LU632_RS09290	0.30	+0.1
1,754,591	+		LU632_RS09290	0.30	-0.4
1,754,591	+		LU632_RS09290	0.30	-1.2
1,754,592	+		LU632_RS09290	0.30	-0.9
1,754,592	-		LU632_RS09290	0.30	+1.0
1,754,592	-		LU632_RS09290	0.30	+0.2
1,754,592	-		LU632_RS09290	0.30	+0.3
1,754,592	-		LU632_RS09290	0.30	+3.5
1,754,592	-		LU632_RS09290	0.30	+0.3
1,754,626	+		LU632_RS09290	0.31	-0.4
1,754,627	-		LU632_RS09290	0.31	-1.5
1,754,681	+		LU632_RS09290	0.32	+1.0
1,754,739	+		LU632_RS09290	0.34	-0.2
1,754,739	+		LU632_RS09290	0.34	-1.4
1,754,739	+		LU632_RS09290	0.34	-0.6
1,754,740	-		LU632_RS09290	0.34	+0.0
1,754,753	-		LU632_RS09290	0.34	+1.8
1,754,804	+		LU632_RS09290	0.36	+2.0
1,754,876	+		LU632_RS09290	0.38	-0.2
1,754,991	+		LU632_RS09290	0.41	-0.0
1,754,992	-		LU632_RS09290	0.41	+0.4
1,754,993	+		LU632_RS09290	0.41	-1.2
1,754,993	+		LU632_RS09290	0.41	+1.1
1,754,993	+		LU632_RS09290	0.41	+0.3
1,754,993	+		LU632_RS09290	0.41	+0.0
1,754,994	-		LU632_RS09290	0.41	-0.0
1,754,994	-		LU632_RS09290	0.41	-0.3
1,754,994	-		LU632_RS09290	0.41	+1.6
1,754,994	-		LU632_RS09290	0.41	+1.7
1,754,994	-		LU632_RS09290	0.41	-0.4
1,754,994	-		LU632_RS09290	0.41	-0.9
1,754,994	-		LU632_RS09290	0.41	-0.8
1,755,017	-		LU632_RS09290	0.41	+0.8
1,755,040	-		LU632_RS09290	0.42	+0.9
1,755,128	+		LU632_RS09290	0.44	-1.5
1,755,198	-		LU632_RS09290	0.46	+1.0
1,755,218	-		LU632_RS09290	0.46	+0.2
1,755,218	-		LU632_RS09290	0.46	+1.0
1,755,240	+		LU632_RS09290	0.47	+0.8
1,755,277	-		LU632_RS09290	0.48	+0.0
1,755,393	-		LU632_RS09290	0.51	-0.2
1,755,393	-		LU632_RS09290	0.51	-1.1
1,755,395	+		LU632_RS09290	0.51	+0.0
1,755,396	-		LU632_RS09290	0.51	+0.4
1,755,396	-		LU632_RS09290	0.51	-0.6
1,755,476	+		LU632_RS09290	0.53	+0.7
1,755,476	+		LU632_RS09290	0.53	-0.6
1,755,476	+		LU632_RS09290	0.53	+1.1
1,755,476	+		LU632_RS09290	0.53	-0.2
1,755,476	+		LU632_RS09290	0.53	-0.8
1,755,477	-		LU632_RS09290	0.53	-1.4
1,755,477	-		LU632_RS09290	0.53	-0.7
1,755,483	-		LU632_RS09290	0.53	-1.8
1,755,546	+		LU632_RS09290	0.55	-1.7
1,755,547	-		LU632_RS09290	0.55	+0.1
1,755,595	+		LU632_RS09290	0.56	-0.3
1,755,596	-		LU632_RS09290	0.56	-0.1
1,755,596	-		LU632_RS09290	0.56	-0.4
1,755,605	-		LU632_RS09290	0.56	-0.1
1,755,801	+		LU632_RS09290	0.62	-0.5
1,755,801	+		LU632_RS09290	0.62	+0.1
1,755,801	+		LU632_RS09290	0.62	+0.8
1,755,801	+		LU632_RS09290	0.62	-1.7
1,755,801	+		LU632_RS09290	0.62	+2.4
1,755,801	+		LU632_RS09290	0.62	-0.9
1,755,802	-		LU632_RS09290	0.62	-1.7
1,755,802	-		LU632_RS09290	0.62	+0.8
1,755,862	-		LU632_RS09290	0.63	-0.7
1,755,862	-		LU632_RS09290	0.63	+0.4
1,755,875	-		LU632_RS09290	0.63	-1.2
1,755,875	-		LU632_RS09290	0.63	+0.5
1,755,895	-		LU632_RS09290	0.64	+0.1
1,756,035	+		LU632_RS09290	0.68	+2.3
1,756,045	+		LU632_RS09290	0.68	-0.2
1,756,065	-		LU632_RS09290	0.68	+0.1
1,756,170	+		LU632_RS09290	0.71	-1.6
1,756,170	+		LU632_RS09290	0.71	-1.9
1,756,170	+		LU632_RS09290	0.71	+1.1
1,756,170	+		LU632_RS09290	0.71	-0.6
1,756,171	-		LU632_RS09290	0.71	+0.9
1,756,172	+		LU632_RS09290	0.71	+1.4
1,756,172	+		LU632_RS09290	0.71	-1.2
1,756,341	-		LU632_RS09290	0.76	+0.7
1,756,423	+		LU632_RS09290	0.78	+0.5
1,756,423	+		LU632_RS09290	0.78	+3.3
1,756,424	-		LU632_RS09290	0.78	+1.3
1,756,433	-		LU632_RS09290	0.78	-0.2
1,756,454	-		LU632_RS09290	0.78	-0.6
1,756,506	+		LU632_RS09290	0.80	-0.6
1,756,506	+		LU632_RS09290	0.80	-2.3
1,756,525	+		LU632_RS09290	0.80	-0.4
1,756,525	+		LU632_RS09290	0.80	-0.3
1,756,707	+		LU632_RS09290	0.85	+1.2
1,756,761	-		LU632_RS09290	0.86	+1.2
1,756,761	-		LU632_RS09290	0.86	+1.0
1,756,767	+		LU632_RS09290	0.87	+1.1
1,756,767	+		LU632_RS09290	0.87	+0.6
1,756,769	+		LU632_RS09290	0.87	+0.1
1,756,770	-		LU632_RS09290	0.87	+1.2
1,756,873	-		LU632_RS09290	0.89	-1.2
1,756,938	+				+0.2
1,756,938	+				-0.3
1,756,938	+				-1.2
1,756,939	-				+0.4
1,756,939	-				+1.6
1,756,940	+				+0.6
1,756,940	+				+0.2
1,756,940	+				+0.6
1,756,941	-				-0.9
1,756,948	-				+0.4
1,757,020	+				+0.2
1,757,020	+				+0.9
1,757,020	+				-1.2
1,757,020	+				-0.1
1,757,020	+				-0.4
1,757,020	+				+0.0
1,757,020	+				-0.1
1,757,020	+				+1.0
1,757,021	-				+0.2
1,757,021	-				-0.6
1,757,021	-				-0.8
1,757,021	-				+1.5
1,757,021	-				-1.0
1,757,021	-				-0.2
1,757,021	-				+0.1
1,757,021	-				+2.1
1,757,155	+				+1.4
1,757,195	-				-2.1
1,757,195	-				-1.2
1,757,208	+				+2.3
1,757,272	+				+0.3
1,757,274	+				+2.8
1,757,274	+				+0.0
1,757,400	+				-0.1
1,757,847	-		LU632_RS09295	0.85	+0.7
1,757,912	-				+1.1
1,758,039	+				-1.4
1,758,040	-				-0.1
1,758,047	+				-0.7
1,758,066	-				+0.8
1,758,095	+				+0.3
1,758,095	+				+0.9
1,758,095	+				-0.4
1,758,158	+	upp	LU632_RS09300	0.18	+0.5