Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09150

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
1,722,835	+				+0.3
1,722,835	+				+0.3
1,722,835	+				-0.1
1,722,835	+				-0.7
1,722,835	+				+0.4
1,722,835	+				+0.8
1,722,836	-				-0.5
1,722,836	-				+0.4
1,722,836	-				+1.0
1,722,836	-				-0.4
1,722,836	-				-0.4
1,722,836	-				-1.2
1,722,836	-				-1.6
1,722,836	-				-0.7
1,722,836	-				+2.0
1,722,836	-				-1.4
1,722,837	+				-0.2
1,722,837	+				+1.8
1,722,837	+				-0.1
1,722,838	-				+0.2
1,722,839	+				-0.3
1,722,840	-				-0.2
1,722,973	-				+1.3
1,722,977	-				-0.1
1,722,977	-				-0.3
1,722,980	+				+0.8
1,722,982	+				-0.2
1,722,982	+				+1.0
1,723,086	+		LU632_RS09150	0.13	+0.5
1,723,090	+		LU632_RS09150	0.14	+1.4
1,723,117	+		LU632_RS09150	0.21	+0.9
1,723,117	+		LU632_RS09150	0.21	-1.3
1,723,118	-		LU632_RS09150	0.21	-1.1
1,723,118	-		LU632_RS09150	0.21	+0.5
1,723,120	-		LU632_RS09150	0.22	-1.0
1,723,125	+		LU632_RS09150	0.23	+0.4
1,723,125	+		LU632_RS09150	0.23	+1.3
1,723,126	-		LU632_RS09150	0.23	+0.2
1,723,129	-		LU632_RS09150	0.24	+1.2
1,723,180	-		LU632_RS09150	0.37	-0.4
1,723,180	-		LU632_RS09150	0.37	+0.3
1,723,180	-		LU632_RS09150	0.37	-1.3
1,723,183	+		LU632_RS09150	0.38	-0.4
1,723,183	+		LU632_RS09150	0.38	+0.4
1,723,252	-		LU632_RS09150	0.55	-1.2
1,723,252	-		LU632_RS09150	0.55	+0.7
1,723,279	-		LU632_RS09150	0.62	+0.9
1,723,293	-		LU632_RS09150	0.66	+2.1
1,723,369	-		LU632_RS09150	0.85	+1.4
1,723,449	+				+0.5
1,723,478	+				-0.9
1,723,479	-				-0.6
1,723,479	-				+1.0
1,723,558	-				-0.4
1,723,584	+				+0.4
1,723,595	-				-1.0
1,723,613	+				+3.4
1,723,614	-				+0.5
1,723,616	-				-1.0
1,723,624	+				-0.7
1,723,767	+				+0.2
1,723,771	+				-1.3
1,723,771	+				+2.0
1,723,772	-				-0.6
1,723,833	-				-0.5
1,723,944	+		LU632_RS09155	0.16	+0.4
1,724,077	-		LU632_RS09155	0.34	+3.7
1,724,162	+		LU632_RS09155	0.46	-0.0
1,724,297	+		LU632_RS09155	0.65	+0.1
1,724,298	-		LU632_RS09155	0.65	-0.6
1,724,298	-		LU632_RS09155	0.65	+0.4
1,724,298	-		LU632_RS09155	0.65	+1.9
1,724,341	+		LU632_RS09155	0.71	+1.0
1,724,341	+		LU632_RS09155	0.71	+2.6
1,724,342	-		LU632_RS09155	0.71	-0.9
1,724,342	-		LU632_RS09155	0.71	+0.8