Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09110

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
1,712,764	+				-1.3
1,712,773	+				+0.8
1,712,972	+		LU632_RS09105	0.37	+0.5
1,712,999	+		LU632_RS09105	0.42	+0.3
1,713,005	-		LU632_RS09105	0.43	+0.2
1,713,221	-		LU632_RS09105	0.79	+0.1
1,713,228	+		LU632_RS09105	0.80	-0.6
1,713,229	-		LU632_RS09105	0.80	-0.7
1,713,251	+		LU632_RS09105	0.84	+0.9
1,713,271	-		LU632_RS09105	0.87	+1.3
1,713,273	+		LU632_RS09105	0.88	+0.6
1,713,274	-		LU632_RS09105	0.88	-2.6
1,713,274	-		LU632_RS09105	0.88	+0.8
1,713,276	-		LU632_RS09105	0.88	-1.6
1,713,279	+		LU632_RS09105	0.89	+0.3
1,713,280	-		LU632_RS09105	0.89	+1.6
1,713,280	-		LU632_RS09105	0.89	-0.6
1,713,336	-				-0.3
1,713,340	-				+0.4
1,713,385	-				+0.1
1,713,567	+		LU632_RS09110	0.22	+0.6
1,713,782	+		LU632_RS09110	0.51	-0.9
1,713,783	-		LU632_RS09110	0.51	-0.3
1,713,902	-		LU632_RS09110	0.67	+0.3
1,713,995	-		LU632_RS09110	0.80	+0.0
1,714,316	+				-0.2
1,714,347	+				+0.5
1,714,347	+				-1.2
1,714,348	-				+0.4
1,714,348	-				+0.6
1,714,348	-				-0.7
1,714,348	-				+1.2
1,714,362	+				+1.1
1,714,362	+				+0.1
1,714,362	+				+0.2
1,714,362	+				-0.0
1,714,362	+				+1.9
1,714,363	-				+1.1
1,714,363	-				-0.9
1,714,415	+				+3.7
1,714,415	+				+0.7
1,714,416	-				+1.0
1,714,546	+		LU632_RS09115	0.15	-0.1
1,714,550	-		LU632_RS09115	0.15	+0.0
1,714,578	+		LU632_RS09115	0.16	-0.0
1,714,578	+		LU632_RS09115	0.16	-0.6
1,714,578	+		LU632_RS09115	0.16	-1.1
1,714,578	+		LU632_RS09115	0.16	+0.6
1,714,579	-		LU632_RS09115	0.16	+0.2
1,714,579	-		LU632_RS09115	0.16	+0.5
1,714,579	-		LU632_RS09115	0.16	+0.2
1,714,579	-		LU632_RS09115	0.16	+1.0
1,714,584	-		LU632_RS09115	0.17	-0.2
1,714,644	+		LU632_RS09115	0.19	+1.2
1,714,644	+		LU632_RS09115	0.19	-0.3
1,714,645	-		LU632_RS09115	0.19	-0.6
1,714,645	-		LU632_RS09115	0.19	+0.9
1,714,646	+		LU632_RS09115	0.19	-0.4
1,714,646	+		LU632_RS09115	0.19	+0.7
1,714,646	+		LU632_RS09115	0.19	-0.4
1,714,649	+		LU632_RS09115	0.19	+0.7
1,714,653	+		LU632_RS09115	0.19	-0.5
1,714,653	+		LU632_RS09115	0.19	+0.9
1,714,654	-		LU632_RS09115	0.19	+0.4
1,714,666	-		LU632_RS09115	0.20	+1.0
1,714,794	-		LU632_RS09115	0.25	+2.4
1,714,811	+		LU632_RS09115	0.26	+1.4
1,714,822	-		LU632_RS09115	0.26	-0.4
1,714,823	+		LU632_RS09115	0.26	-0.7
1,714,918	+		LU632_RS09115	0.30	+0.0
1,714,965	+		LU632_RS09115	0.32	+0.1
1,714,965	+		LU632_RS09115	0.32	+0.9
1,714,965	+		LU632_RS09115	0.32	-0.5
1,714,966	-		LU632_RS09115	0.32	+0.2
1,714,966	-		LU632_RS09115	0.32	+7.0
1,714,967	+		LU632_RS09115	0.32	+0.3
1,714,967	+		LU632_RS09115	0.32	-0.9
1,715,028	-		LU632_RS09115	0.34	-1.2
1,715,037	+		LU632_RS09115	0.34	+0.1
1,715,046	-		LU632_RS09115	0.35	+2.5
1,715,080	+		LU632_RS09115	0.36	+0.2