Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08925

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
1,683,985	+	hisIE	LU632_RS08915	0.82	+1.1
1,683,985	+	hisIE	LU632_RS08915	0.82	-1.8
1,683,986	-	hisIE	LU632_RS08915	0.82	-0.6
1,683,987	+	hisIE	LU632_RS08915	0.83	-0.6
1,683,987	+	hisIE	LU632_RS08915	0.83	-1.6
1,683,988	-	hisIE	LU632_RS08915	0.83	-3.0
1,684,042	+				-1.2
1,684,043	-				-3.5
1,684,146	+				+2.4
1,684,146	+				-0.8
1,684,146	+				-1.1
1,684,149	+				-0.9
1,684,263	+	hisF	LU632_RS08920	0.23	+0.6
1,684,263	+	hisF	LU632_RS08920	0.23	-0.6
1,684,263	+	hisF	LU632_RS08920	0.23	+0.4
1,684,264	-	hisF	LU632_RS08920	0.23	-2.2
1,684,332	+	hisF	LU632_RS08920	0.32	-1.0
1,684,332	+	hisF	LU632_RS08920	0.32	-3.1
1,684,336	-	hisF	LU632_RS08920	0.32	-2.1
1,684,431	-	hisF	LU632_RS08920	0.44	-0.7
1,684,445	+	hisF	LU632_RS08920	0.46	-2.9
1,684,466	+	hisF	LU632_RS08920	0.49	-1.2
1,684,466	+	hisF	LU632_RS08920	0.49	-1.8
1,684,467	-	hisF	LU632_RS08920	0.49	+0.1
1,684,589	-	hisF	LU632_RS08920	0.65	-1.4
1,684,589	-	hisF	LU632_RS08920	0.65	-0.9
1,684,589	-	hisF	LU632_RS08920	0.65	-0.2
1,684,801	+				-1.8
1,684,866	+				-1.2
1,684,866	+				+0.8
1,684,866	+				-0.2
1,685,234	+	hisA	LU632_RS08925	0.53	-0.9
1,685,234	+	hisA	LU632_RS08925	0.53	-1.2
1,685,471	-	hisA	LU632_RS08925	0.85	+0.4
1,685,471	-	hisA	LU632_RS08925	0.85	-1.7
1,685,478	+	hisA	LU632_RS08925	0.86	-0.9
1,685,503	+	hisA	LU632_RS08925	0.89	-1.9
1,685,576	+				-2.2
1,685,589	+				-1.8
1,685,590	-				-0.2
1,685,703	+	hisH	LU632_RS08930	0.19	-1.2
1,685,703	+	hisH	LU632_RS08930	0.19	-2.3
1,685,703	+	hisH	LU632_RS08930	0.19	-0.6
1,685,704	-	hisH	LU632_RS08930	0.20	-0.9
1,685,704	-	hisH	LU632_RS08930	0.20	-1.5
1,685,707	+	hisH	LU632_RS08930	0.20	-0.9
1,685,708	-	hisH	LU632_RS08930	0.20	-1.7
1,685,708	-	hisH	LU632_RS08930	0.20	-0.5
1,685,708	-	hisH	LU632_RS08930	0.20	-1.1
1,685,708	-	hisH	LU632_RS08930	0.20	+1.9
1,685,708	-	hisH	LU632_RS08930	0.20	-1.0
1,685,745	+	hisH	LU632_RS08930	0.27	-1.8
1,685,745	+	hisH	LU632_RS08930	0.27	-2.8
1,685,746	-	hisH	LU632_RS08930	0.27	+0.4
1,685,746	-	hisH	LU632_RS08930	0.27	-2.3
1,685,746	-	hisH	LU632_RS08930	0.27	+0.4
1,685,760	+	hisH	LU632_RS08930	0.29	-2.4
1,685,766	+	hisH	LU632_RS08930	0.30	+1.4
1,685,766	+	hisH	LU632_RS08930	0.30	-1.9
1,685,767	-	hisH	LU632_RS08930	0.30	+0.2
1,685,767	-	hisH	LU632_RS08930	0.30	-2.2
1,685,767	-	hisH	LU632_RS08930	0.30	-2.1
1,686,181	-				+1.0
1,686,181	-				-1.3
1,686,368	+	hisB	LU632_RS08935	0.18	-0.4
1,686,391	+	hisB	LU632_RS08935	0.20	-0.6
1,686,403	+	hisB	LU632_RS08935	0.21	-2.3
1,686,403	+	hisB	LU632_RS08935	0.21	-2.1
1,686,403	+	hisB	LU632_RS08935	0.21	-1.3
1,686,404	-	hisB	LU632_RS08935	0.21	+1.4
1,686,405	+	hisB	LU632_RS08935	0.21	-1.6
1,686,405	+	hisB	LU632_RS08935	0.21	-1.1
1,686,573	+	hisB	LU632_RS08935	0.37	+0.4
1,686,574	-	hisB	LU632_RS08935	0.37	-0.2
1,686,574	-	hisB	LU632_RS08935	0.37	+1.4