Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08890

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
1,678,060	-		LU632_RS08885	0.29	-3.0
1,678,060	-		LU632_RS08885	0.29	-1.3
1,678,182	-		LU632_RS08885	0.45	-1.2
1,678,292	+		LU632_RS08885	0.60	-1.4
1,678,357	-		LU632_RS08885	0.68	-2.9
1,678,428	+		LU632_RS08885	0.77	-3.1
1,678,428	+		LU632_RS08885	0.77	-1.9
1,678,582	+				+0.7
1,678,783	+				-1.9
1,678,811	-				+0.4
1,679,188	+	gndA	LU632_RS08890	0.29	-0.6
1,679,189	-	gndA	LU632_RS08890	0.29	-0.2
1,679,205	-	gndA	LU632_RS08890	0.30	-1.2
1,679,686	+	gndA	LU632_RS08890	0.64	-0.6
1,679,881	+	gndA	LU632_RS08890	0.78	+1.4
1,679,881	+	gndA	LU632_RS08890	0.78	-1.8
1,680,031	+	gndA	LU632_RS08890	0.89	-0.8
1,680,031	+	gndA	LU632_RS08890	0.89	+0.4
1,680,035	+	gndA	LU632_RS08890	0.89	-1.2
1,680,142	-				+1.4
1,680,201	+				-0.6
1,680,942	+				+3.4
1,680,964	+				+0.7
1,680,965	-				+1.6
1,681,059	+				+0.7
1,681,059	+				-0.6
1,681,060	-				+0.3
1,681,060	-				+0.1
1,681,060	-				+0.6
1,681,060	-				-0.9
1,681,135	-				-1.0
1,681,135	-				-0.7
1,681,178	-				-0.8
1,681,178	-				-0.8