Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07660

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
1,435,479	+		LU632_RS07660	0.22	+1.1
1,435,480	+		LU632_RS07660	0.22	+2.5
1,435,480	+		LU632_RS07660	0.22	+1.5
1,435,480	+		LU632_RS07660	0.22	+0.4
1,435,481	-		LU632_RS07660	0.23	+0.1
1,435,481	-		LU632_RS07660	0.23	+1.5
1,435,481	-		LU632_RS07660	0.23	-1.0
1,435,481	-		LU632_RS07660	0.23	+1.0
1,435,482	+		LU632_RS07660	0.23	+2.3
1,435,691	+		LU632_RS07660	0.67	-0.8
1,435,691	+		LU632_RS07660	0.67	-0.3
1,435,693	+		LU632_RS07660	0.67	-2.1
1,435,693	+		LU632_RS07660	0.67	+0.9
1,435,694	-		LU632_RS07660	0.68	+0.6
1,435,699	+		LU632_RS07660	0.69	+1.8
1,435,699	+		LU632_RS07660	0.69	+0.2
1,435,699	+		LU632_RS07660	0.69	-0.7
1,435,700	-		LU632_RS07660	0.69	-1.2
1,435,700	-		LU632_RS07660	0.69	-0.9
1,435,704	-		LU632_RS07660	0.70	-0.0
1,435,704	-		LU632_RS07660	0.70	-0.9
1,435,704	-		LU632_RS07660	0.70	-1.1
1,435,777	+		LU632_RS07660	0.85	-0.1
1,435,787	+		LU632_RS07660	0.87	-0.3
1,435,791	+		LU632_RS07660	0.88	+1.9
1,435,791	+		LU632_RS07660	0.88	+0.8
1,435,791	+		LU632_RS07660	0.88	-3.1
1,435,791	+		LU632_RS07660	0.88	+0.8
1,435,834	+				-1.9
1,435,834	+				+0.3
1,435,837	+				+0.8
1,435,837	+				-2.3
1,435,883	+				-0.2
1,435,888	+				+0.5
1,435,913	-				+0.4
1,435,929	+				-0.1
1,436,089	+				+1.5
1,436,354	-		LU632_RS07665	0.34	-0.5
1,436,355	+		LU632_RS07665	0.34	-1.4
1,436,356	-		LU632_RS07665	0.34	+0.1
1,436,421	+		LU632_RS07665	0.43	-0.5
1,436,422	-		LU632_RS07665	0.43	+1.8
1,436,422	-		LU632_RS07665	0.43	-0.1
1,436,560	+		LU632_RS07665	0.61	-0.5
1,436,620	-		LU632_RS07665	0.69	-0.4
1,436,635	-		LU632_RS07665	0.71	+0.3
1,436,652	+		LU632_RS07665	0.73	+1.0
1,436,680	-		LU632_RS07665	0.76	+0.2
1,436,680	-		LU632_RS07665	0.76	+3.8
1,436,680	-		LU632_RS07665	0.76	-0.1
1,436,680	-		LU632_RS07665	0.76	+0.2
1,436,726	+		LU632_RS07665	0.82	-0.5
1,436,726	+		LU632_RS07665	0.82	+0.9
1,436,726	+		LU632_RS07665	0.82	+1.2
1,436,727	-		LU632_RS07665	0.82	-1.1
1,436,727	-		LU632_RS07665	0.82	+0.5
1,436,727	-		LU632_RS07665	0.82	+0.9
1,436,727	-		LU632_RS07665	0.82	-1.6
1,436,727	-		LU632_RS07665	0.82	-1.4
1,436,727	-		LU632_RS07665	0.82	-1.1
1,436,728	+		LU632_RS07665	0.83	+0.1
1,436,728	+		LU632_RS07665	0.83	+0.5
1,436,729	-		LU632_RS07665	0.83	-1.4
1,436,820	-				-1.5
1,436,825	+				+0.4