Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06880

Experiment: plant=Squash; plant sample=QP2; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP2; plant location=NA
1,319,708	+		LU632_RS06870	0.37	+0.8
1,319,728	+		LU632_RS06870	0.44	+1.2
1,319,728	+		LU632_RS06870	0.44	-0.3
1,319,728	+		LU632_RS06870	0.44	+0.5
1,319,729	-		LU632_RS06870	0.44	+0.4
1,319,817	+		LU632_RS06870	0.76	-0.5
1,319,817	+		LU632_RS06870	0.76	-0.5
1,319,817	+		LU632_RS06870	0.76	+1.6
1,319,857	-				-1.2
1,319,857	-				+0.2
1,319,882	+				+0.4
1,319,882	+				-0.2
1,319,883	-				+1.1
1,319,883	-				+0.3
1,319,884	+				-0.4
1,319,885	-				-0.2
1,319,885	-				-0.1
1,319,893	-				-0.7
1,319,912	-				-1.2
1,320,258	+				+0.3
1,320,260	+		LU632_RS06875	0.10	+0.3
1,320,260	+		LU632_RS06875	0.10	+0.7
1,320,261	-		LU632_RS06875	0.10	-0.7
1,320,261	-		LU632_RS06875	0.10	-1.3
1,320,261	-		LU632_RS06875	0.10	-0.1
1,320,272	+		LU632_RS06875	0.13	+4.7
1,320,458	-		LU632_RS06875	0.53	-0.3
1,320,463	-		LU632_RS06875	0.54	+0.5
1,320,479	-		LU632_RS06875	0.57	+0.3
1,320,492	-		LU632_RS06875	0.60	-0.1
1,320,532	+		LU632_RS06875	0.68	+0.4
1,320,532	+		LU632_RS06875	0.68	+1.0
1,320,896	-		LU632_RS06880	0.26	+0.4
1,320,897	+		LU632_RS06880	0.26	-0.3
1,320,931	+		LU632_RS06880	0.30	+0.3
1,320,932	-		LU632_RS06880	0.30	+0.6
1,320,992	-		LU632_RS06880	0.38	+0.6
1,320,993	+		LU632_RS06880	0.38	-0.3
1,320,993	+		LU632_RS06880	0.38	-1.1
1,320,994	-		LU632_RS06880	0.38	+0.4
1,320,994	-		LU632_RS06880	0.38	+1.6
1,321,117	-		LU632_RS06880	0.53	-0.6
1,321,146	+		LU632_RS06880	0.56	+0.6
1,321,146	-		LU632_RS06880	0.56	+0.7
1,321,212	-		LU632_RS06880	0.64	-0.7
1,321,483	-				-0.1
1,321,515	+				-0.4
1,321,516	-				-0.8
1,321,516	-				+0.3
1,321,519	-				-1.6
1,321,521	+				-0.6
1,321,522	-				-0.0
1,321,563	+				+0.1
1,321,563	+				-0.2
1,321,564	-				-0.4
1,321,566	+				+0.2
1,321,567	-				-1.1
1,321,708	+				+0.6
1,321,709	-				+0.8
1,321,814	+				+1.5
1,321,815	-				+1.2
1,321,817	+				+1.3
1,322,079	+				-1.6
1,322,291	+		LU632_RS06885	0.76	-1.0
1,322,295	-		LU632_RS06885	0.77	+2.1
1,322,295	-		LU632_RS06885	0.77	-0.2
1,322,360	+				+0.3